| Literature DB >> 32748943 |
Xu Chao1,2, Xuesong Feng2, Hailong Shi2, Yuewen Wang2, Lanlan Wang2, Haiyu Shen2, Qing Zha2, Yanni Chen2, Chao Jiang3,4.
Abstract
Numerous evidence has revealed that single-nucleotide polymorphisms (SNPs) are associated with liver cancer risk. To assess whether the MIR17HG polymorphisms are associated with the liver cancer risk in the Chinese Han population, we performed a case-control (432 liver cancer patients and 430 healthy controls) study. Genotyping of four variants of MIR17HG was performed with the Agena MassARRAY platform. We used χ2 test to compare the distribution of SNPs allele and genotypes frequencies of cases and controls. Odds ratios (ORs) and 95% confidence intervals (CIs) were calculated by logistic regression analysis to evaluate the association under genetic models. The results indicated that the rs7318578 was significantly associated with increased the risk of liver cancer in the allele (OR = 1.45, 95% CI: 1.18-1.77, P=3.04E-04), recessive (OR = 3.69, 95% CI: 2.45-5.56, P=4.52E-10) and additive model (OR = 1.35, 95% CI: 1.13-1.62, P=0.001). Moreover, we found that individuals with the genotype CC of rs7318578 presented with an increased risk of liver cancer (OR = 3.03, 95% CI: 1.98-4.65, P=3.83E-07); however, the CA genotype of rs7318578 significantly decreased the risk of liver cancer (OR = 0.61, 95% CI: 0.45-0.83, P=0.001, compared with those with the AA genotype. Our findings indicated that MIR17HG polymorphism (rs7318578) contributes to liver cancer susceptibility to the Chinese Han population. Further studies with larger samples are required to confirm the results, as well as functional studies to determine the role of this SNP in miRNA expression or molecular pathways.Entities:
Keywords: MIR17HG; case-control study; liver cancer; single nucleotide polymorphisms; susceptibility
Mesh:
Substances:
Year: 2020 PMID: 32748943 PMCID: PMC7457078 DOI: 10.1042/BSR20193312
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Characteristics of liver cancer patients and controls in the present study
| Characteristics | Cases (%) | Controls (%) | |
|---|---|---|---|
| Total | 432 | 430 | |
| Gender | |||
| Male | 344 (79.6) | 342 (79.5) | 0.846 |
| Female | 88 (20.4) | 88 (20.5) | |
| Age (year) | |||
| Mean ± SD | 55.09 ± 11.59 | 55.22 ± 10.73 | 0.861 |
| BMI | |||
| Mean ± SD | 24.52 ± 4.52 | 24.36 ± 4.29 | 0.571 |
| Smoking | |||
| Yes | 183 (42.4) | 173 (40.2) | 0.556 |
| No | 249 (57.6) | 257 (59.8) | |
| Drinking | |||
| Yes | 168 (38.9) | 162 (37.7) | 0.714 |
| No | 264 (61.1) | 268 (62.3) | |
| Tumor history | |||
| Yes | 50 (11.6) | 18 (4.2) | <0.001 |
| No | 382 (88.4) | 412 (95.8) | |
| Tumor stage | |||
| I-II | 274 (63.0) | ||
| III-IV | 161 (37.0) |
P<0.05 indicates statistical significance.
Allele frequencies distribution and association with liver cancer risk
| SNP–ID | Chr, Position | Role | Allele A/B | MAF | HWE– | OR (95%CI) | ||
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs75267932 | 13, 91351812 | Intron | G/A | 0.116 | 0.111 | 0.461 | 1.04 (0.78–1.41) | 0.775 |
| rs72640334 | 13, 91352674 | Intron | A/C | 0.115 | 0.088 | 0.560 | 1.34 (0.98–1.83) | 0.069 |
| rs7318578 | 13, 91353215 | Intron | C/A | 0.377 | 0.294 | 0.727 | 1.45 (1.18–1.77) | 3.04E-04 |
| rs17735387 | 13, 91353800 | Intron | A/G | 0.201 | 0.201 | 0.652 | 1.00 (0.79–1.27) | 0.971 |
Abbreviations: CI, confidence interval; Chr, chromosome; HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; OR: odds ratio; SNP, single-nucleotide polymorphism.
P<0.05 indicates statistical significance.
P<(0.05/4 = 0.0125) indicates statistical significance with Bonferroni correction.
Genetics models analyses of association MIR17HG polymorphisms with liver cancer risk
| SNP-ID | Model | Genotype | Case (%) | Control (%) | OR (95% CI) | adjust OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|
| rs75267932 | Codominant | AA | 340 (78.7) | 342 (79.4) | 1 | 1 | ||
| GA | 84 (19.4) | 82 (19.0) | 1.03 (0.73–1.45) | 0.863 | 1.03 (0.74–1.45) | 0.850 | ||
| GG | 8 (1.9) | 7 (1.6) | 1.15 (0.41–3.21) | 0.790 | 1.15 (0.41–3.21) | 0.788 | ||
| Dominant | AA | 340 (78.7) | 342 (79.4) | 1 | 1 | |||
| GG-GA | 92 (21.3) | 89 (20.6) | 1.04 (0.75–1.44) | 0.816 | 1.04 (0.75–1.45) | 0.803 | ||
| Recessive | GA-AA | 424 (98.1) | 424 (98.4) | 1.14 (0.41–3.18) | 0.798 | 1.14 (0.41–3.18) | 0.797 | |
| GG | 8 (1.9) | 7 (1.6) | ||||||
| Additive | 1.04 (0.78–1.4) | 0.779 | 1.05 (0.78–1.40) | 0.768 | ||||
| rs72640334 | Codominant | CC | 336 (77.8) | 357 (82.8) | 1 | 1 | ||
| AC | 93 (21.5) | 72 (16.7) | 1.37 (0.98–1.93) | 0.070 | 1.37 (0.97–1.93) | 0.070 | ||
| AA | 3 (0.7) | 2 (0.5) | 1.59 (0.26–9.60) | 0.611 | 1.59 (0.26–9.60) | 0.613 | ||
| Dominant | CC | 336 (77.8) | 357 (82.8) | 1 | 1 | |||
| AA-AC | 96 (22.2) | 74 (17.2) | 1.38 (0.98–1.93) | 0.063 | 1.38 (0.98–1.93) | 0.064 | ||
| Recessive | AC-CC | 429 (99.3) | 429 (99.5) | 1 | 1 | |||
| AA | 3 (0.7) | 2 (0.5) | 1.50 (0.25–9.02) | 0.658 | 1.49 (0.25–9.00) | 0.662 | ||
| Additive | 1.36 (0.98–1.88) | 0.063 | 1.36 (0.98–1.88) | 0.064 | ||||
| rs7318578 | Codominant | AA | 212 (49.3) | 211 (49.3) | 1 | 1 | ||
| CA | 112 (26.0) | 182 (42.5) | 0.61 (0.45–0.83) | 0.002 | 0.61 (0.45–0.83) | 0.001 | ||
| CC | 106 (24.7) | 35 (8.2) | 3.01 (1.97–4.62) | 4.09E–07 | 3.03 (1.98–4.65) | 3.83E–07 | ||
| Dominant | AA | 212 (49.3) | 211 (49.3) | 1 | 1 | |||
| CC-CA | 218 (50.7) | 217 (50.7) | 1.00 (0.77–1.31) | 0.999 | 1.00 (0.76–1.31) | 0.996 | ||
| Recessive | CA-AA | 324 (75.3) | 393 (91.8) | 1 | 1 | |||
| CC | 106 (24.7) | 35 (8.2) | 3.67 (2.44–5.53) | 4.70E–10 | 3.69 (2.45–5.56) | 4.52E–10 | ||
| Additive | 1.35 (1.13–1.63) | 0.001 | 1.35 (1.13–1.62) | 0.001 | ||||
| rs17735387 | Codominant | GG | 276 (63.9) | 277 (64.3) | 1 | 1 | ||
| AG | 138 (31.9) | 135 (31.3) | 1.03 (0.77–1.37) | 0.863 | 1.03 (0.77–1.37) | 0.867 | ||
| AA | 18 (4.2) | 19 (4.4) | 0.95 (0.49–1.85) | 0.882 | 0.95 (0.49–1.85) | 0.880 | ||
| Dominant | GG | 276 (63.9) | 277 (64.3) | 1 | 1 | |||
| AA-AG | 156 (36.1) | 154 (35.7) | 1.02 (0.77–1.34) | 0.907 | 1.02 (0.77–1.34) | 0.912 | ||
| Recessive | AG-GG | 414 (95.8) | 412 (95.6) | 1 | 1 | |||
| AA | 18 (4.2) | 19 (4.4) | 0.94 (0.49–1.82) | 0.861 | 0.94 (0.49–1.82) | 0.859 | ||
| Additive | 1.00 (0.80–1.27) | 0.972 | 1.00 (0.79–1.27) | 0.976 |
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single-nucleotide polymorphism.
Adjust OR (95% CI) were calculated by logistic regression analysis with adjustments for age and gender.
P<0.05 indicates statistical significance.
P<(0.05/4 = 0.0125) indicates statistical significance with Bonferroni correction.
Association of rs7318578 with liver cancer risk
| Model | Genotype | Case (%) | Control (%) | OR (95% CI) | case | control | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|
| Age | >55 | ≤55 | |||||||
| Codominant | AA | 101 (48.6) | 94 (50.8) | 1 | 111 (50) | 117 (48.1) | 1 | ||
| CA | 57 (27.4) | 77 (41.6) | 0.68 (0.44–1.07) | 0.094 | 55 (24.8) | 105 (43.2) | 0.56 (0.37–0.86) | 0.007 | |
| CC | 50 (24) | 14 (7.6) | 3.37 (1.74–6.51) | <0.0001 | 56 (25.2) | 21 (8.6) | 2.73 (1.55–4.83) | 0.001 | |
| Dominant | AA | 101 (48.6) | 94 (50.8) | 1 | 111 (50) | 117 (48.1) | 1 | ||
| CC-CA | 107 (51.4) | 91 (49.2) | 1.09 (0.74–1.63) | 0.658 | 111 (50) | 126 (51.9) | 0.93 (0.64–1.34) | 0.698 | |
| Recessive | CA-AA | 158 (76) | 171 (92.4) | 1 | 166 (74.8) | 222 (91.4) | 1 | ||
| CC | 50 (24) | 14 (7.6) | 3.91 (2.07–7.38) | <0.0001 | 56 (25.2) | 21 (8.6) | 3.43 (1.99–5.92) | <0.0001 | |
| Additive | — | — | — | 1.41 (1.08–1.86) | 0.013 | — | — | 1.29 (1.01–1.66) | 0.043 |
| Gender | Male | Female | |||||||
| Codominant | AA | 170 (49.6) | 163 (48.1) | 1 | 42 (48.3) | 47 (53.4) | 1 | ||
| CA | 90 (26.2) | 147 (43.4) | 0.59 (0.42–0.82) | 0.002 | 22 (25.3) | 35 (39.8) | 0.70 (0.36–1.38) | 0.306 | |
| CC | 83 (24.2) | 29 (8.6) | 2.77 (1.72–4.46) | <0.0001 | 23 (26.4) | 6 (6.8) | 4.30 (1.6–11.6) | 0.004 | |
| Dominant | AA | 170 (49.6) | 163 (48.1) | 1 | 42 (48.3) | 47 (53.4) | 1 | ||
| CC-CA | 173 (50.4) | 176 (51.9) | 0.94 (0.70–1.27) | 0.698 | 45 (51.7) | 41 (46.6) | 1.23 (0.68–2.22) | 0.497 | |
| Recessive | CA-AA | 260 (75.8) | 310 (91.4) | 1 | 64 (73.6) | 82 (93.2) | 1 | ||
| CC | 83 (24.2) | 29 (8.6) | 3.44 (2.18–5.42) | <0.0001 | 23 (26.4) | 6 (6.8) | 4.93 (1.89–12.84) | 0.001 | |
| Additive | — | — | — | 1.30 (1.06–1.59) | 0.013 | — | — | 1.57 (1.05–2.37) | 0.030 |
| Smoking | No | Yes | |||||||
| Codominant | A/A | 118 (48) | 124 (48.6) | 1 | <0.0001 | 93 (50.8) | 86 (50) | 1 | <0.0001 |
| C/A | 72 (29.3) | 114 (44.7) | 0.66 (0.45–0.98) | 40 (21.9) | 69 (40.1) | 0.54 (0.33–0.87) | |||
| C/C | 56 (22.8) | 17 (6.7) | 3.46 (1.90–6.30) | 50 (27.3) | 17 (9.9) | 2.72 (1.46–5.07) | |||
| Dominant | A/A | 118 (48) | 124 (48.6) | 1 | 0.880 | 93 (50.8) | 86 (50) | 1 | 0.880 |
| C/A-C/C | 128 (52) | 131 (51.4) | 1.03 (0.72–1.46) | 90 (49.2) | 86 (50) | 0.97 (0.64–1.47) | |||
| Recessive | A/A-C/A | 190 (77.2) | 238 (93.3) | 1 | <0.0001 | 133 (72.7) | 155 (90.1) | 1 | <0.0001 |
| C/C | 56 (22.8) | 17 (6.7) | 4.13 (2.32–7.33) | 50 (27.3) | 17 (9.9) | 3.43 (1.89–6.23) | |||
| Additive | — | — | — | 1.39 (1.08–1.78) | 0.009 | — | — | 1.33 (1.01–1.74) | 0.042 |
| Drinking | No | Yes | |||||||
| Codominant | A/A | 139 (53) | 135 (50.9) | 1 | <0.0001 | 73 (43.5) | 75 (46.3) | 1 | <0.0001 |
| C/A | 62 (23.7) | 110 (41.5) | 0.55 (0.37–0.81) | 50 (29.8) | 73 (45.1) | 0.70 (0.43–1.14) | |||
| C/C | 61 (23.3) | 20 (7.5) | 2.96 (1.70–5.17) | 45 (26.8) | 14 (8.6) | 3.30 (1.67–6.52) | |||
| Dominant | A/A | 139 (53) | 135 (50.9) | 1 | 0.630 | 73 (43.5) | 75 (46.3) | 1 | 0.600 |
| C/A-C/C | 123 (47) | 130 (49.1) | 0.92 (0.65–1.29) | 95 (56.5) | 87 (53.7) | 1.12 (0.73–1.73) | |||
| Recessive | A/A-C/A | 201 (76.7) | 245 (92.5) | 1 | <0.0001 | 123 (73.2) | 148 (91.4) | 1 | <0.0001 |
| C/C | 61 (23.3) | 20 (7.5) | 3.72 (2.17–6.37) | 45 (26.8) | 14 (8.6) | 3.87 (2.03–7.38) | |||
| Additive | — | — | — | 1.29 (1.02–1.63) | 0.033 | — | — | 1.47 (1.09–1.97) | 0.010 |
| BMI | >24 | ≤ 24 | |||||||
| Codominant | A/A | 108 (49.1) | 96 (45.5) | 1 | <0.0001 | 104 (49.5) | 114 (52.8) | 1 | <0.0001 |
| C/A | 56 (25.4) | 100 (47.4) | 0.50 (0.32–0.76) | 56 (26.7) | 83 (38.4) | 0.74 (0.48–1.14) | |||
| C/C | 56 (25.4) | 15 (7.1) | 3.32 (1.76–6.25) | 50 (23.8) | 19 (8.8) | 2.88 (1.60–5.21) | |||
| Dominant | A/A | 108 (49.1) | 96 (45.5) | 1 | 0.460 | 104 (49.5) | 114 (52.8) | 1 | 0.500 |
| C/A-C/C | 112 (50.9) | 115 (54.5) | 0.87 (0.59–1.26) | 106 (50.5) | 102 (47.2) | 1.14 (0.78–1.67) | |||
| Recessive | A/A-C/A | 164 (74.5) | 196 (92.9) | 1 | <0.0001 | 160 (76.2) | 197 (91.2) | 1 | <0.0001 |
| C/C | 56 (25.4) | 15 (7.1) | 4.46 (2.43–8.18) | 50 (23.8) | 19 (8.8) | 3.24 (1.84–5.72) | |||
| Additive | — | — | — | 1.32 (1.01–1.70) | 0.037 | — | — | 1.40 (1.08–1.81) | 0.011 |
Abbreviations: CI, confidence interval; OR, odds ratio; SNP, single-nucleotide polymorphism.
OR (95% CI) were calculated by logistic regression analysis with adjustments for age and gender.
P<0.05 indicates statistical significance.
P<(0.05/4 = 0.0125) indicates statistical significance with Bonferroni correction.