Literature DB >> 32748718

Draft Genome of Fusarium oxysporum f. sp. cubense Strain Tropical Race-4 Infecting Cavendish (AAA) Group of Banana in India.

R Thangavelu1, E Edwin Raj1, P Pushpakanth1, M Loganathan1, S Uma1.   

Abstract

Fusarium wilt, caused by the fungus Fusarium oxysporum f. sp. cubense, is the most serious pandemic disease of banana. In this study, we report the draft genome of F. oxysporum f. sp. cubense vegetative compatibility group (VCG) 01213/16 of strain tropical race 4 (TR4) that infects the Cavendish (AAA) group of banana collected from the subtropical region in India. The genome assembly of SFoc TR4 comprises 47,384,463 bp with 4,034 contigs and 15,508 protein-coding regions. Based on VCG analysis, the fungal isolate belongs to F. oxysporum f. sp. cubense TR4 but the genome sequence of SFoc TR4 shows differences in secreted-in-xylem (SIX) protein gene clusters (specifically, SIX8) in comparison with the reference genome of F. oxysporum f. sp. lycopersici and F. oxysporum f. sp. cubense TR4.

Entities:  

Keywords:  Foc TR4; banana wilt disease; secreted in xylem; whole-genome sequencing

Year:  2020        PMID： 32748718     DOI： 10.1094/PDIS-06-20-1170-A

Source DB:  PubMed          Journal:  Plant Dis        ISSN： 0191-2917            Impact factor:   4.438


  8 in total

1.  Morphoanatomy and Histochemistry of Septal Nectaries Related to Female Fertility in Banana Plants of the 'Cavendish' Subgroup.

Authors:  Manassés Dos Santos Silva; Adriele Nascimento Santana; Janay Almeida Dos Santos-Serejo; Claudia Fortes Ferreira; Edson Perito Amorim
Journal:  Plants (Basel)       Date:  2022-04-27

2.  Phenolic Compounds and Oxidative Enzymes Involved in Female Fertility in Banana Plants of the Cavendish Subgroup.

Authors:  Manassés Dos Santos Silva; Naiala da Hora Góes; Janay Almeida Dos Santos-Serejo; Claudia Fortes Ferreira; Edson Perito Amorim
Journal:  Plants (Basel)       Date:  2021-12-16

3.  Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex.

Authors:  A R McTaggart; T Y James; R G Shivas; A Drenth; B D Wingfield; B A Summerell; T A Duong
Journal:  Stud Mycol       Date:  2021-12-17       Impact factor: 16.097

4.  Assembly, Annotation, and Comparative Whole Genome Sequence of Fusarium verticillioides Isolated from Stored Maize Grains.

Authors:  Vishwambar D Navale; Amol M Sawant; Varun U Gowda; Koteswara Rao Vamkudoth
Journal:  Pathogens       Date:  2022-07-20

5.  Draft Genome Sequence of Fusarium oxysporum f. sp. cubense Tropical Race 4 from Peru, Obtained by Nanopore and Illumina Hybrid Assembly.

Authors:  Ana M Leiva; Mathieu Rouard; Diana Lopez-Alvarez; Alberto Cenci; Catherine Breton; Rosalyn Acuña; Juan Carlos Rojas; Miguel Dita; Wilmer J Cuellar
Journal:  Microbiol Resour Announc       Date:  2022-08-08

6.  FoCupin1, a Cupin_1 domain-containing protein, is necessary for the virulence of Fusarium oxysporum f. sp. cubense tropical race 4.

Authors:  Tiantian Yan; Xiaofan Zhou; Jieling Li; Guanjun Li; Yali Zhao; Haojie Wang; Huaping Li; Yanfang Nie; Yunfeng Li
Journal:  Front Microbiol       Date:  2022-08-30       Impact factor: 6.064

Review 7.  Improvements in the Resistance of the Banana Species to Fusarium Wilt: A Systematic Review of Methods and Perspectives.

Authors:  Anelita de Jesus Rocha; Julianna Matos da Silva Soares; Fernanda Dos Santos Nascimento; Adriadna Souza Santos; Vanusia Batista de Oliveira Amorim; Claudia Fortes Ferreira; Fernando Haddad; Janay Almeida Dos Santos-Serejo; Edson Perito Amorim
Journal:  J Fungi (Basel)       Date:  2021-03-25

8.  In Vitro Secretome Analysis Suggests Differential Pathogenic Mechanisms between Fusarium oxysporum f. sp. cubense Race 1 and Race 4.

Authors:  Yanqiu He; Xiaofan Zhou; Jieling Li; Huaping Li; Yunfeng Li; Yanfang Nie
Journal:  Biomolecules       Date:  2021-09-12
  8 in total

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