Literature DB >> 32745952

Human adaptation over the past 40,000 years.

Iain Mathieson1.   

Abstract

Over the past few years several methodological and data-driven advances have greatly improved our ability to robustly detect genomic signatures of selection in humans. New methods applied to large samples of present-day genomes provide increased power, while ancient DNA allows precise estimation of timing and tempo. However, despite these advances, we are still limited in our ability to translate these signatures into understanding about which traits were actually under selection, and why. Combining information from different populations and timescales may allow interpretation of selective sweeps. Other modes of selection have proved more difficult to detect. In particular, despite strong evidence of the polygenicity of most human traits, evidence for polygenic selection is weak, and its importance in recent human evolution remains unclear. Balancing selection and archaic introgression seem important for the maintenance of potentially adaptive immune diversity, but perhaps less so for other traits.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32745952      PMCID: PMC7484260          DOI: 10.1016/j.gde.2020.06.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  93 in total

1.  Reduced signal for polygenic adaptation of height in UK Biobank.

Authors:  Jeremy J Berg; Arbel Harpak; Nasa Sinnott-Armstrong; Anja Moltke Joergensen; Hakhamanesh Mostafavi; Yair Field; Evan August Boyle; Xinjun Zhang; Fernando Racimo; Jonathan K Pritchard; Graham Coop
Journal:  Elife       Date:  2019-03-21       Impact factor: 8.140

Review 2.  How well do we understand the basis of classic selective sweeps in humans?

Authors:  Michał Szpak; Yali Xue; Qasim Ayub; Chris Tyler-Smith
Journal:  FEBS Lett       Date:  2019-06-11       Impact factor: 4.124

3.  Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc.

Authors:  Choongwon Jeong; Andrew T Ozga; David B Witonsky; Helena Malmström; Hanna Edlund; Courtney A Hofman; Richard W Hagan; Mattias Jakobsson; Cecil M Lewis; Mark S Aldenderfer; Anna Di Rienzo; Christina Warinner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-20       Impact factor: 11.205

4.  The genomic history of the Iberian Peninsula over the past 8000 years.

Authors:  Iñigo Olalde; Swapan Mallick; Nick Patterson; Nadin Rohland; Vanessa Villalba-Mouco; Marina Silva; Katharina Dulias; Ceiridwen J Edwards; Francesca Gandini; Maria Pala; Pedro Soares; Manuel Ferrando-Bernal; Nicole Adamski; Nasreen Broomandkhoshbacht; Olivia Cheronet; Brendan J Culleton; Daniel Fernandes; Ann Marie Lawson; Matthew Mah; Jonas Oppenheimer; Kristin Stewardson; Zhao Zhang; Juan Manuel Jiménez Arenas; Isidro Jorge Toro Moyano; Domingo C Salazar-García; Pere Castanyer; Marta Santos; Joaquim Tremoleda; Marina Lozano; Pablo García Borja; Javier Fernández-Eraso; José Antonio Mujika-Alustiza; Cecilio Barroso; Francisco J Bermúdez; Enrique Viguera Mínguez; Josep Burch; Neus Coromina; David Vivó; Artur Cebrià; Josep Maria Fullola; Oreto García-Puchol; Juan Ignacio Morales; F Xavier Oms; Tona Majó; Josep Maria Vergès; Antònia Díaz-Carvajal; Imma Ollich-Castanyer; F Javier López-Cachero; Ana Maria Silva; Carmen Alonso-Fernández; Germán Delibes de Castro; Javier Jiménez Echevarría; Adolfo Moreno-Márquez; Guillermo Pascual Berlanga; Pablo Ramos-García; José Ramos-Muñoz; Eduardo Vijande Vila; Gustau Aguilella Arzo; Ángel Esparza Arroyo; Katina T Lillios; Jennifer Mack; Javier Velasco-Vázquez; Anna Waterman; Luis Benítez de Lugo Enrich; María Benito Sánchez; Bibiana Agustí; Ferran Codina; Gabriel de Prado; Almudena Estalrrich; Álvaro Fernández Flores; Clive Finlayson; Geraldine Finlayson; Stewart Finlayson; Francisco Giles-Guzmán; Antonio Rosas; Virginia Barciela González; Gabriel García Atiénzar; Mauro S Hernández Pérez; Armando Llanos; Yolanda Carrión Marco; Isabel Collado Beneyto; David López-Serrano; Mario Sanz Tormo; António C Valera; Concepción Blasco; Corina Liesau; Patricia Ríos; Joan Daura; María Jesús de Pedro Michó; Agustín A Diez-Castillo; Raúl Flores Fernández; Joan Francès Farré; Rafael Garrido-Pena; Victor S Gonçalves; Elisa Guerra-Doce; Ana Mercedes Herrero-Corral; Joaquim Juan-Cabanilles; Daniel López-Reyes; Sarah B McClure; Marta Merino Pérez; Arturo Oliver Foix; Montserrat Sanz Borràs; Ana Catarina Sousa; Julio Manuel Vidal Encinas; Douglas J Kennett; Martin B Richards; Kurt Werner Alt; Wolfgang Haak; Ron Pinhasi; Carles Lalueza-Fox; David Reich
Journal:  Science       Date:  2019-03-15       Impact factor: 47.728

5.  Genome-wide signals of positive selection in human evolution.

Authors:  David Enard; Philipp W Messer; Dmitri A Petrov
Journal:  Genome Res       Date:  2014-03-11       Impact factor: 9.043

6.  Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.

Authors:  Emilia Huerta-Sánchez; Xin Jin; Zhuoma Bianba; Benjamin M Peter; Nicolas Vinckenbosch; Yu Liang; Xin Yi; Mingze He; Mehmet Somel; Peixiang Ni; Bo Wang; Xiaohua Ou; Jiangbai Luosang; Zha Xi Ping Cuo; Kui Li; Guoyi Gao; Ye Yin; Wei Wang; Xiuqing Zhang; Xun Xu; Huanming Yang; Yingrui Li; Jian Wang; Jun Wang; Rasmus Nielsen
Journal:  Nature       Date:  2014-07-02       Impact factor: 49.962

7.  Identifying genetic variants that affect viability in large cohorts.

Authors:  Hakhamanesh Mostafavi; Tomaz Berisa; Felix R Day; John R B Perry; Molly Przeworski; Joseph K Pickrell
Journal:  PLoS Biol       Date:  2017-09-05       Impact factor: 8.029

8.  Replication and characterization of CADM2 and MSRA genes on human behavior.

Authors:  Brian Boutwell; David Hinds; Jorim Tielbeek; Ken K Ong; Felix R Day; John R B Perry
Journal:  Heliyon       Date:  2017-07-26

9.  A community-maintained standard library of population genetic models.

Authors:  Jeffrey R Adrion; Christopher B Cole; Noah Dukler; Jared G Galloway; Ariella L Gladstein; Graham Gower; Christopher C Kyriazis; Aaron P Ragsdale; Georgia Tsambos; Simon Gravel; Ryan N Gutenkunst; Kirk E Lohmueller; Peter L Ralph; Daniel R Schrider; Adam Siepel; Jerome Kelleher; Andrew D Kern; Franz Baumdicker; Jedidiah Carlson; Reed A Cartwright; Arun Durvasula; Ilan Gronau; Bernard Y Kim; Patrick McKenzie; Philipp W Messer; Ekaterina Noskova; Diego Ortega-Del Vecchyo; Fernando Racimo; Travis J Struck
Journal:  Elife       Date:  2020-06-23       Impact factor: 8.140

10.  High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability.

Authors:  Pier Francesco Palamara; Jonathan Terhorst; Yun S Song; Alkes L Price
Journal:  Nat Genet       Date:  2018-08-13       Impact factor: 38.330

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  8 in total

1.  A selection pressure landscape for 870 human polygenic traits.

Authors:  Weichen Song; Yueqi Shi; Weidi Wang; Weihao Pan; Wei Qian; Shunying Yu; Min Zhao; Guan Ning Lin
Journal:  Nat Hum Behav       Date:  2021-11-15

2.  The genomic signatures of natural selection in admixed human populations.

Authors:  Sebastian Cuadros-Espinoza; Guillaume Laval; Lluis Quintana-Murci; Etienne Patin
Journal:  Am J Hum Genet       Date:  2022-03-07       Impact factor: 11.043

Review 3.  Evolution in small steps and giant leaps.

Authors:  Noah K Whiteman
Journal:  Evolution       Date:  2022-01-29       Impact factor: 4.171

4.  The evolution of group differences in changing environments.

Authors:  Arbel Harpak; Molly Przeworski
Journal:  PLoS Biol       Date:  2021-01-25       Impact factor: 8.029

5.  Human ancient DNA analyses reveal the high burden of tuberculosis in Europeans over the last 2,000 years.

Authors:  Gaspard Kerner; Guillaume Laval; Etienne Patin; Stéphanie Boisson-Dupuis; Laurent Abel; Jean-Laurent Casanova; Lluis Quintana-Murci
Journal:  Am J Hum Genet       Date:  2021-03-04       Impact factor: 11.025

6.  The Opportunities and Challenges of Integrating Population Histories Into Genetic Studies for Diverse Populations: A Motivating Example From Native Hawaiians.

Authors:  Charleston W K Chiang
Journal:  Front Genet       Date:  2021-09-27       Impact factor: 4.599

7.  Analysis of genetic selection at insulin receptor substrate-2 gene loci.

Authors:  Issei Yoshiuchi
Journal:  J Diabetes Metab Disord       Date:  2021-01-23

8.  HSD17B7 gene in self-renewal and oncogenicity of keratinocytes from Black versus White populations.

Authors:  Xiaoying Xu; Beatrice Tassone; Paola Ostano; Atul Katarkar; Tatiana Proust; Jean-Marc Joseph; Chiara Riganti; Giovanna Chiorino; Zoltan Kutalik; Karine Lefort; Gian Paolo Dotto
Journal:  EMBO Mol Med       Date:  2021-06-29       Impact factor: 12.137

  8 in total

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