| Literature DB >> 32741697 |
Susmit Mhatre1, Tishya Srivastava1, Shivraj Naik1, Vandana Patravale2.
Abstract
BACKGROUND: The rapid spread of novel coronavirus called SARS-CoV-2 or nCoV has caused countries all over the world to impose lockdowns and undertake stringent preventive measures. This new positive-sense single-stranded RNA strain of coronavirus spreads through droplets of saliva and nasal discharge.Entities:
Keywords: COVID-19; EGCG; SARS-CoV-2; Tea polyphenols; Theaflavin
Year: 2020 PMID: 32741697 PMCID: PMC7367004 DOI: 10.1016/j.phymed.2020.153286
Source DB: PubMed Journal: Phytomedicine ISSN: 0944-7113 Impact factor: 5.340
Summary of known antiviral activity of EGCG.
| Virus | Genome | Conclusion | Reference |
| Porcine reproductive and respiratory syndrome virus (PRRSV) | ssRNA | EGCG effectively inhibits PRRSV infection and replication in porcine alveolar macrophages. It prevents MARC-145 cells from getting infected from PRRSV | |
| Hepatitis C virus (HCV) | ssRNA | EGCG prevents infection by inhibiting the entry of HCV into hepatoma cell lines and primary human hepatocytes thus | Ciesek et al. (2011) |
| Human immunodeficiency virus (HIV) | ssRNA | EGCG interferes with the interaction of host cell receptors and virus envelope and inhibits the entry of the virus into target cells | |
| Zika virus | ssRNA | Cells pre-treated with EGCG showed no virus infection | Carneiro et al. (2016) |
| Chikungunya | ssRNA | The entry, replication, and release were inhibited of CHIKV in vitro by EGCG | |
| West Nile Virus (WNV) | ssRNA | EGCG has a direct effect on the WNV when treated at early stages of the infection | Carneiro et al. (2016) |
| Dengue | ssRNA | EGCG directly interacts with the virus molecule causing virus deformation and thus preventing the virus from infecting further cells | Raekiansyah et al. (2018) |
| Influenza A/H1N1, A/H3N2, B | ssRNA | EGCG inhibits acidification of intracellular endosome compartments essential in the fusion of membranes of virus and host cell | |
| Rotavirus | ssRNA | EGCG reduces the reactive oxygen species produced and prevents infection | Ho et al. (2009) |
| Ebola | ssRNA | EGCG inhibits HSPS5 protein of the host which is the target of Ebola virus treatments thus reducing the virus multiplication once infected | Reid et al. (2014) |
| Murine norovirus and feline calicivirus | ssRNA | EGCG at 100 μM was found out to be the most potent prophylactic agent when compared with other flavonoids | Seo et al. (2016) |
Summary of known antiviral activity of TFs.
| Virus | Genome | Conclusion | Reference |
| Sindbis Virus | ssRNA | TFs extract inhibited the viral infection by 99% at a concentration of 14.6mM | |
| TMV | ssRNA | TFs interfered with the viral replication cycle by attachment to TMV-RNA complex | |
| Influenza A and B | ssRNA | TF1 had an IC50 value of 16.21 μg/ml against the virus, which is the best among 13 flavonoids studied using cytopathic effect inhibition assay. | |
| HSV | dsDNA | TF3 in combination with acyclovir showed an increased 21.8% inhibition than acyclovir alone in WST-1 assay | |
| Rotavirus and coronavirus | ssRNA | Synergistic activity when all TFs were administered | |
| HCV | ssRNA | Act directly on the viral particles and inhibit the ability to bind to receptor surface | |
| Caliciviruses | ssRNA | Best | |
| HIV-1 | ssRNA | TF3 inhibits the entry of virus by targeting gp41. |
Fig. 1Sites on SARS-CoV-2 docked with therapeutic molecules.
Binding energies (μM) of EGCG, Remdesivir and Chloroquine with 6lu7, 6lvn, 6lxt, 6vsb (Mf et al., 2020).
| Compound | 6lu7 | 6lvn | 6lxt | 6vsb |
| EGCG | −6.99 | −4.90 | −7.57 | −7.26 |
| Remdesivir | −2.47 | −2.68 | −4.84 | −4.27 |
| Chloroquine | −3.62 | −3.26 | −4.35 | −4.79 |
Inhibition constants (μM) of EGCG, Remdesivir and Chloroquine with 6lu7, 6lvn, 6lxt, 6vsb (Mf et al., 2020).
| Compound | 6lu7 | 6lvn | 6lxt | 6vsb |
| EGCG | 7.57 | 255.95 | 2.84 | 4.75 |
| Remdesivir | 15.4 × 10−5 | 10.7 × 10−5 | 281.48 | 745.64 |
| Chloroquine | 2.2 × 10−5 | 4.0 × 10−5 | 651.5 | 309.3 |
Fig. 2Depiction of role of tea polyphenols on druggable targets of COVID-19.
Summary of recent studies on in-silico activity of tea polyphenols on COVID-19 receptors.
| Sr. no | Polyphenol studied | Receptor targeted | Activity | Reference |
| 1 | EGCG | 3CLpro | Inhibition activity better than other phytochemicals | |
| 2 | TF2b | 3CLpro | Better interaction as compared to repurposed drugs | |
| 3 | TF | RdRp | Best | |
| 4 | TF | Spike RBD | Good molecular docking score with multiple hydrogen bonds | |
| 5 | TF3 | M protease | Better affinity among 169 phytoconstituents used as spices and flavours | |
| 6 | EGCG | Multiple structural proteins | Better interaction than Chloroquine and Remdesivir | |
| 7 | TF3 | ACE2 Receptor | Directly binds to the receptor and acts as prophylactic agent | |
| 8 | TF2 and TF3 | 3CLpro | Molecular docking scores of −9.8 and −10 on the receptor repectively | |
| 9 | TF | 3CLpro | Better |