Literature DB >> 32737466

Structural basis for the neutralization of SARS-CoV-2 by an antibody from a convalescent patient.

Daming Zhou1, Helen M E Duyvesteyn1, Cheng-Pin Chen2, Yuguang Zhao1, Chung-Guei Huang3,4, Ting-Hua Chen5, Shin-Ru Shih3,4, Yi-Chun Lin6, Chien-Yu Cheng2, Shu-Hsing Cheng6, Yhu-Chering Huang7, Tzou-Yien Lin7, Che Ma5, Jiandong Huo1,8,9, Loic Carrique1, Tomas Malinauskas1, Reinis R Ruza1, Pranav N M Shah1, Tiong Kit Tan10, Pramila Rijal10,11, Robert F Donat10, Kerry Godwin12, Karen R Buttigieg12, Julia A Tree12, Julika Radecke13, Neil G Paterson13, Piyada Supasa14, Juthathip Mongkolsapaya14,15, Gavin R Screaton14, Miles W Carroll12,14, Javier Gilbert-Jaramillo16, Michael L Knight16, William James16, Raymond J Owens1,8,9, James H Naismith1,8,9, Alain R Townsend10,11, Elizabeth E Fry1, Jingshan Ren1, David I Stuart17,18,19, Kuan-Ying A Huang20,21.   

Abstract

The COVID-19 pandemic has had an unprecedented health and economic impact and there are currently no approved therapies. We have isolated an antibody, EY6A, from an individual convalescing from COVID-19 and have shown that it neutralizes SARS-CoV-2 and cross-reacts with SARS-CoV-1. EY6A Fab binds the receptor binding domain (RBD) of the viral spike glycoprotein tightly (KD of 2 nM), and a 2.6-Å-resolution crystal structure of an RBD-EY6A Fab complex identifies the highly conserved epitope, away from the ACE2 receptor binding site. Residues within this footprint are key to stabilizing the pre-fusion spike. Cryo-EM analyses of the pre-fusion spike incubated with EY6A Fab reveal a complex of the intact spike trimer with three Fabs bound and two further multimeric forms comprising the destabilized spike attached to Fab. EY6A binds what is probably a major neutralizing epitope, making it a candidate therapeutic for COVID-19.

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Year:  2020        PMID: 32737466     DOI: 10.1038/s41594-020-0480-y

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  37 in total

1.  Brain abscess due to Nocardia caviae. Report of a fatal outcome associated with abnormal phagocyte function.

Authors:  R W Bradsher; T P Monson; R W Steele
Journal:  Am J Clin Pathol       Date:  1982-07       Impact factor: 2.493

2.  Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion.

Authors:  Alexandra C Walls; M Alejandra Tortorici; Joost Snijder; Xiaoli Xiong; Berend-Jan Bosch; Felix A Rey; David Veesler
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

3.  Potent cross-reactive neutralization of SARS coronavirus isolates by human monoclonal antibodies.

Authors:  Zhongyu Zhu; Samitabh Chakraborti; Yuxian He; Anjeanette Roberts; Tim Sheahan; Xiaodong Xiao; Lisa E Hensley; Ponraj Prabakaran; Barry Rockx; Igor A Sidorov; Davide Corti; Leatrice Vogel; Yang Feng; Jae-Ouk Kim; Lin-Fa Wang; Ralph Baric; Antonio Lanzavecchia; Kristopher M Curtis; Gary J Nabel; Kanta Subbarao; Shibo Jiang; Dimiter S Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

4.  Potent neutralization of severe acute respiratory syndrome (SARS) coronavirus by a human mAb to S1 protein that blocks receptor association.

Authors:  Jianhua Sui; Wenhui Li; Akikazu Murakami; Azaibi Tamin; Leslie J Matthews; Swee Kee Wong; Michael J Moore; Aimee St Clair Tallarico; Mobolaji Olurinde; Hyeryun Choe; Larry J Anderson; William J Bellini; Michael Farzan; Wayne A Marasco
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

5.  Human monoclonal antibody combination against SARS coronavirus: synergy and coverage of escape mutants.

Authors:  Jan ter Meulen; Edward N van den Brink; Leo L M Poon; Wilfred E Marissen; Cynthia S W Leung; Freek Cox; Chung Y Cheung; Arjen Q Bakker; Johannes A Bogaards; Els van Deventer; Wolfgang Preiser; Hans Wilhelm Doerr; Vincent T Chow; John de Kruif; Joseph S M Peiris; Jaap Goudsmit
Journal:  PLoS Med       Date:  2006-07       Impact factor: 11.069

6.  Human monoclonal antibodies block the binding of SARS-CoV-2 spike protein to angiotensin converting enzyme 2 receptor.

Authors:  Xiangyu Chen; Ren Li; Zhiwei Pan; Chunfang Qian; Yang Yang; Renrong You; Jing Zhao; Pinghuang Liu; Leiqiong Gao; Zhirong Li; Qizhao Huang; Lifan Xu; Jianfang Tang; Qin Tian; Wei Yao; Li Hu; Xiaofeng Yan; Xinyuan Zhou; Yuzhang Wu; Kai Deng; Zheng Zhang; Zhaohui Qian; Yaokai Chen; Lilin Ye
Journal:  Cell Mol Immunol       Date:  2020-04-20       Impact factor: 11.530

7.  Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.

Authors:  Daniel Wrapp; Nianshuang Wang; Kizzmekia S Corbett; Jory A Goldsmith; Ching-Lin Hsieh; Olubukola Abiona; Barney S Graham; Jason S McLellan
Journal:  Science       Date:  2020-02-19       Impact factor: 47.728

8.  Cryo-EM structure of the SARS coronavirus spike glycoprotein in complex with its host cell receptor ACE2.

Authors:  Wenfei Song; Miao Gui; Xinquan Wang; Ye Xiang
Journal:  PLoS Pathog       Date:  2018-08-13       Impact factor: 6.823

9.  Real estimates of mortality following COVID-19 infection.

Authors:  David Baud; Xiaolong Qi; Karin Nielsen-Saines; Didier Musso; Léo Pomar; Guillaume Favre
Journal:  Lancet Infect Dis       Date:  2020-03-12       Impact factor: 25.071

10.  SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.

Authors:  Markus Hoffmann; Hannah Kleine-Weber; Simon Schroeder; Nadine Krüger; Tanja Herrler; Sandra Erichsen; Tobias S Schiergens; Georg Herrler; Nai-Huei Wu; Andreas Nitsche; Marcel A Müller; Christian Drosten; Stefan Pöhlmann
Journal:  Cell       Date:  2020-03-05       Impact factor: 41.582

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  120 in total

1.  A conserved immunogenic and vulnerable site on the coronavirus spike protein delineated by cross-reactive monoclonal antibodies.

Authors:  Chunyan Wang; Rien van Haperen; Javier Gutiérrez-Álvarez; Wentao Li; Nisreen M A Okba; Irina Albulescu; Ivy Widjaja; Brenda van Dieren; Raul Fernandez-Delgado; Isabel Sola; Daniel L Hurdiss; Olalekan Daramola; Frank Grosveld; Frank J M van Kuppeveld; Bart L Haagmans; Luis Enjuanes; Dubravka Drabek; Berend-Jan Bosch
Journal:  Nat Commun       Date:  2021-03-17       Impact factor: 14.919

2.  Bioinformatics for the Origin and Evolution of Viruses.

Authors:  Jiajia Chen; Yuxin Zhang; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

3.  SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies.

Authors:  Christopher O Barnes; Claudia A Jette; Morgan E Abernathy; Kim-Marie A Dam; Shannon R Esswein; Harry B Gristick; Andrey G Malyutin; Naima G Sharaf; Kathryn E Huey-Tubman; Yu E Lee; Davide F Robbiani; Michel C Nussenzweig; Anthony P West; Pamela J Bjorkman
Journal:  Nature       Date:  2020-10-12       Impact factor: 49.962

4.  A broadly cross-reactive antibody neutralizes and protects against sarbecovirus challenge in mice.

Authors:  David R Martinez; Alexandra Schäfer; Sophie Gobeil; Dapeng Li; Gabriela De la Cruz; Robert Parks; Xiaozhi Lu; Maggie Barr; Victoria Stalls; Katarzyna Janowska; Esther Beaudoin; Kartik Manne; Katayoun Mansouri; Robert J Edwards; Kenneth Cronin; Boyd Yount; Kara Anasti; Stephanie A Montgomery; Juanjie Tang; Hana Golding; Shaunna Shen; Tongqing Zhou; Peter D Kwong; Barney S Graham; John R Mascola; David C Montefiori; S Munir Alam; Gregory Sempowski; Gregory D Sempowski; Surender Khurana; Kevin Wiehe; Kevin O Saunders; Priyamvada Acharya; Barton F Haynes; Ralph S Baric
Journal:  Sci Transl Med       Date:  2022-01-26       Impact factor: 17.956

Review 5.  A Structural Landscape of Neutralizing Antibodies Against SARS-CoV-2 Receptor Binding Domain.

Authors:  Ling Niu; Kathryn N Wittrock; Gage C Clabaugh; Vikram Srivastava; Michael W Cho
Journal:  Front Immunol       Date:  2021-04-28       Impact factor: 7.561

Review 6.  50 Years of Structural Immunology.

Authors:  Ian A Wilson; Robyn L Stanfield
Journal:  J Biol Chem       Date:  2021-05-03       Impact factor: 5.157

7.  Breadth and function of antibody response to acute SARS-CoV-2 infection in humans.

Authors:  Kuan-Ying A Huang; Tiong Kit Tan; Ting-Hua Chen; Chung-Guei Huang; Ruth Harvey; Saira Hussain; Cheng-Pin Chen; Adam Harding; Javier Gilbert-Jaramillo; Xu Liu; Michael Knight; Lisa Schimanski; Shin-Ru Shih; Yi-Chun Lin; Chien-Yu Cheng; Shu-Hsing Cheng; Yhu-Chering Huang; Tzou-Yien Lin; Jia-Tsrong Jan; Che Ma; William James; Rodney S Daniels; John W McCauley; Pramila Rijal; Alain R Townsend
Journal:  PLoS Pathog       Date:  2021-02-26       Impact factor: 6.823

8.  A SARS-CoV-2 neutralizing antibody with extensive Spike binding coverage and modified for optimal therapeutic outcomes.

Authors:  Yu Guo; Lisu Huang; Guangshun Zhang; Yanfeng Yao; He Zhou; Shu Shen; Bingqing Shen; Bo Li; Xin Li; Qian Zhang; Mingjie Chen; Da Chen; Jia Wu; Dan Fu; Xinxin Zeng; Mingfang Feng; Chunjiang Pi; Yuan Wang; Xingdong Zhou; Minmin Lu; Yarong Li; Yaohui Fang; Yun-Yueh Lu; Xue Hu; Shanshan Wang; Wanju Zhang; Ge Gao; Francisco Adrian; Qisheng Wang; Feng Yu; Yun Peng; Alexander G Gabibov; Juan Min; Yuhui Wang; Heyu Huang; Alexey Stepanov; Wei Zhang; Yan Cai; Junwei Liu; Zhiming Yuan; Chen Zhang; Zhiyong Lou; Fei Deng; Hongkai Zhang; Chao Shan; Liang Schweizer; Kun Sun; Zihe Rao
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

Review 9.  Molecular mechanism of interaction between SARS-CoV-2 and host cells and interventional therapy.

Authors:  Qianqian Zhang; Rong Xiang; Shanshan Huo; Yunjiao Zhou; Shibo Jiang; Qiao Wang; Fei Yu
Journal:  Signal Transduct Target Ther       Date:  2021-06-11

10.  Analysis of the molecular mechanism of SARS-CoV-2 antibodies.

Authors:  Dongfu Jin; Jing Wei; Jian Sun
Journal:  Biochem Biophys Res Commun       Date:  2021-06-05       Impact factor: 3.575

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