| Literature DB >> 32735862 |
Shahnaz Sultan1, Shazia M Siddique2, Osama Altayar3, Angela M Caliendo4, Perica Davitkov5, Joseph D Feuerstein6, Dawn Francis7, John M Inadomi8, Joseph K Lim9, Yngve Falck-Ytter5, Reem A Mustafa10.
Abstract
Entities:
Keywords: COVID-19; Diagnostic test; SARS-CoV-2
Mesh:
Substances:
Year: 2020 PMID: 32735862 PMCID: PMC7386603 DOI: 10.1053/j.gastro.2020.07.043
Source DB: PubMed Journal: Gastroenterology ISSN: 0016-5085 Impact factor: 22.682
Executive Summary of Recommendationsa
| What is the role of a pretesting strategy in asymptomatic individuals 48–72 h before endoscopy (including a self-quarantine between testing and endoscopy)? Benefits: Triage and PPE use to reduce the risk of infection. Downsides: Patient burden, limited testing capacity, testing logistics, and cost. | |
|---|---|
| Recommendation | Remarks |
| Recommendation 1 For most endoscopy centers where the prevalence of asymptomatic SARS-CoV-2 infection is intermediate (0.5%–2%), the AGA suggests implementing a pretesting strategy using information about prevalence and test performance (sensitivity/specificity) in combination with considerations about the benefits and downsides of the strategy. | In settings where testing is feasible and there is less perceived burden on patients, and when the benefits outweigh the downsides (eg, false positives do not significantly outnumber the true positives), an endoscopy center may reasonably choose to implement a pretesting strategy. Among individuals that test negative, endoscopists and staff should use surgical masks |
| Recommendation 2 For endoscopy centers where the prevalence of asymptomatic SARS-CoV-2 infection is low (<0.5%), the AGA suggests against implementing a pretesting strategy. | In low-prevalence settings, a pretesting strategy may not be informative for triage due to the high number of false positives, thus PPE availability may drive decision-making. If PPE is available, the majority of gastroenterologists may reasonably select to use N95/N99 |
| Recommendation 3 For a small number of endoscopy centers in high-prevalence areas, the AGA suggests against implementing a pretesting strategy. In “hotspots,” endoscopy may be reserved for emergency or time-sensitive procedures with use of N95/N99 | In high-prevalence areas, a pretesting strategy may not be informative for decisions about PPE use because of the unacceptable number of false negatives and PPE availability may drive decision-making. |
| Recommendation 4 For all endoscopy centers, the AGA recommends against serologic testing as part of a pretesting strategy for patients or endoscopy staff. | Serology testing for the presence of antibodies indicates past infection and has no role in diagnosing SARS-CoV-2 infection in asymptomatic individuals before endoscopy. |
These recommendations assume that all patients are systematically screened for COVID-19 symptoms using the CDC screening checklist and are required to wear masks while in the endoscopy unit. The strength of a recommendation is expressed as strong or conditional and has the following interpretation: strong recommendation—for clinicians: most individuals should follow the recommended course of action, and only a small proportion should not; conditional recommendation—for clinicians: the majority of individuals in this situation would want the suggested course of action but many would not; different choices will be appropriate.
Appropriate PPE includes a face shield over the surgical mask and face shield over the N95/N99 respirator (to allow for reuse/extended use in limited PPE availability settings).
Supplementary Figure 1Preferred Reporting Items for Systematic Reviews and Meta-Analyses Flow Diagram of Studies. MeSH, Medical Subject Heading.
Interpretation of the Certainty in Evidence of Effects Using the GRADE Framework
| GRADE | Description |
|---|---|
| High | We are very confident that the true effect lies close to that of the estimate of the effect. |
| Moderate | We are moderately confident in the effect estimate. The true effect is likely to be close to the estimate of the effect, but there is a possibility that it is substantially different. |
| Low | Our confidence in the effect estimate is limited. The true effect may be substantially different from the estimate of the effect. |
| Very low | We have very little confidence in the effect estimate. The true effect is likely to be substantially different from the estimate of effect |
Interpretation of Stronga and Conditionalb Recommendations Using the GRADE Framework
| Implications | Strong recommendation | Conditional recommendation |
|---|---|---|
| For patients | Most individuals in this situation would want the recommended course of action and only a small proportion would not. | The majority of individuals in this situation would want the suggested course of action, but many would not. |
| For clinicians | Most individuals should receive the intervention. Formal decision aids are not likely to be needed to help individuals make decisions consistent with their values and preferences. | Different choices will be appropriate for individual patients consistent with his or her values and preferences. Use shared-decision making. Decision aids may be useful in helping patients make decisions consistent with their individual risks, values and preferences. |
| For policy-makers | The recommendation may be adapted as policy or performance measure in most situations | Policy-making will require substantial debate and involvement of various stakeholders. Performance measures should assess whether decision-making is appropriate. |
Strong recommendations are indicated by statements that lead with “we recommend.”
Conditional recommendations are indicated by statements that lead with “we suggest.”
Quality Assessment of Diagnostic Accuracy Studies-2 Assessment of Risk of Bias for Diagnostic Test Accuracy Studies
| Study first author | Patient selection | Index test | Reference standard | Flow and timing |
|---|---|---|---|---|
| Craney | High | High | Low | Low |
| Craney | High | High | Low | Low |
| Craney | Low | Low | Low | Low |
| Craney | Low | Low | Low | Low |
| Loeffelholz | Low | Low | Low | Low |
| Loeffelholz | Low | Low | Low | Low |
| Loeffelholz | Low | Low | Unclear | Low |
| Loeffelholz | Low | Low | Unclear | High |
| Loeffelholz | Low | Low | Unclear | Low |
| Loeffelholz | Low | Low | Unclear | Low |
| Loeffelholz | Low | Low | Unclear | Low |
| Visseaux | Low | Low | Low | Low |
| Visseaux | Low | Low | Low | Low |
| Mitchell | High | Low | Low | High |
| Basu | Low | Unclear | Low | Low |
| Lieberman | Low | High | Low | Unclear |
| Lieberman | Low | High | Low | Unclear |
| Lieberman | Low | High | Low | Unclear |
| Lieberman | Low | High | Low | Unclear |
| Lieberman | High | High | Unclear | Unclear |
| Lieberman | High | High | Unclear | Unclear |
| Lieberman | High | High | Unclear | Unclear |
| Lieberman | High | High | Unclear | Unclear |
| Smith | High | Unclear | Unclear | Unclear |
| Smith | High | Unclear | Unclear | Unclear |
| Smith | High | Unclear | Unclear | Unclear |
| Bordi (SD vs LDT WHO) | Low | Low | High | Low |
| Broder | High | High | Low | Low |
| Smithgall | High | Low | High | Low |
| Smithgall | High | Low | High | Low |
| Uhteg | High | Low | High | Low |
| Zhen | High | Low | High | Low |
| Zhen | High | Low | High | Low |
| Zhen | High | Low | High | Low |
AIDN, Abbott ID Now; CXX, Cepheid Xpert Xpress; DS, Diasorin Simplexa; LDT, laboratory-developed test; HPF, Hologic Panther Fusion; WHO, World Health Organization.
All articles were published in 2020.
Figure 1Forest plot of test accuracy (pooled sensitivity and specificity).
Supplementary Figure 2Test accuracy (pooled sensitivity and specificity) of studies with low risk of bias.
Survey Respondent Characteristics by Risk-Aversion Threshold
| Characteristic | All respondents | Characteristics by response selection | ||||
|---|---|---|---|---|---|---|
| 1 in 1000 | 1 in 2500 | 1 in 5000 | 1 in 10,000 | 1 in 40,000 | ||
| Total, n | 74 | 19 | 10 | 10 | 7 | 28 |
| Sex, male, n ( | 51 (68.9) | 12 (63.2) | 9 (90.0) | 10 (100.0) | 5 (71.4) | 15 (53.6) |
| Settings, n ( | ||||||
| Academic medical center | 23 (31.1) | 4 (21.1) | 5 (50.0) | 1 (10.0) | 4 (57.1) | 9 (32.1) |
| Independent practice | 34 (45.9) | 12 (63.2) | 3 (30.0) | 4 (40.0) | 3 (42.9) | 12 (42.9) |
| Nonacademic hospital | 15 (20.3) | 2 (10.5) | 1 (10.0) | 5 (50.0) | 0 (0.0) | 7 (25.0) |
| Other | 1 (1.4) | 0 (0.0) | 1 (10.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Veterans Affairs hospital | 1 (1.4) | 1 (5.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Group size, median (IQR) | 7.0 (4.0–20.0) | 9.0 (5.0–24.0) | 8.5 (4.5–18.8) | 4.0 (4.0–8.3) | 8.0 (5.5–37.0) | 8.0 (4.0–14.5) |
| Clinical experience | ||||||
| Procedures per year, median (IQR) | 500 (300–1000) | 493 (213–1075) | 400 (263–1000) | 800 (325–950) | 450 (325–500) | 500 (300–1000) |
| Years of practice, median (IQR) | 20 (12–30) | 22.5 (15.5–30) | 17.5 (6.5–25.5) | 31 (30–33.5) | 20 (9–25) | 17.5 (11.3–27.5) |
Figure 2GRADE summary of findings table of test accuracy results for prevalence of 0.5%, 1%, and 2% of SARS-CoV-2 infection in asymptomatic individuals.
Figure 3Considerations for adopting a pretesting strategy in intermediate-prevalence settings.
Figure 4Interactive tool output showing variation in test performance with varying prevalence.
Checklist for Endoscopy Center Reopening
Pre-arrival symptom screening for patients using the CDC checklist. |
Limit entry of individuals of nonessential individuals (patients, visitors, and staff). |
All individuals (patients, visitors, and staff) should wear masks at all times, unless access to the nose or mouth are necessary for patient care. |
Set up waiting rooms to allow patients to be at least 6 feet apart. If your facility does not have a waiting area, then use partitions or signs to create designated areas or waiting lines. |
Maintain physical distancing (at least 6 feet) in waiting areas between visitors. When space is limited, consider providing alternate areas for visitor waiting and/or requesting visitors wait outside of the facility. |
Per institutional and local governmental protocols, additional consent regarding the risks of contracting COVID-19 may be required. |
Frequent and scrupulous hand hygiene for all individuals in the health care facility. |
Ensure best practices in donning, doffing, and disposal of PPE. |
Appropriate disposal of all single-use equipment after use and decontamination of reusable equipment strictly in line with the manufacturer's instructions. |
How to Calculate Prevalence of Asymptomatic SARS-CoV-2: Case Example
| Variable | Data |
|---|---|
| Cumulative no. of cases diagnosed as of June 30, 2020 in Missouri | 21,551 |
| Cumulative no. of cases diagnosed as of June 16, 2020 in Missouri | 16,416 |
| No. of cases diagnosed between June 16 and June 30, 2020 in Missouri | 5137 |
| Estimated no. of cases after correcting for asymptomatic individuals | 51,370 |
| Estimated state population | 6,137,428 |
| Estimated prevalence after correcting for asymptomatic individuals, | 0.8 |
Figure 5Testing strategy considerations in low- and high-prevalence areas accounting for testing and PPE availability. Highest level of PPE includes N95/N99 respirators and PAPRs, along with a face shield. A hotspot is defined by a surge in COVID-19 cases with an acute burden on hospital capacity. In limited PPE settings, extended use and reuse of N95/N99 respirators can be considered.
Frequently Asked Questions About Diagnostic Tests for SARS-CoV-2
| Question | Answer |
|---|---|
| What kinds of SARS-CoV-2 diagnostic tests are currently available in the United States? | On February 4, 2020, the Secretary of the US Department of Health and Human Services determined there was a public health emergency that justified the authorization of emergency use of in vitro diagnostics for COVID-19. Commercial manufacturers and clinical laboratories were required to submit details about SARS-CoV-2 assays to the US Food and Drug Administration (FDA) for review and Emergency Use Authorization (EUA). |
| What additional factors can impact test performance? | Source of specimen: Specimen sources for SARS-CoV-2 testing include nasopharyngeal (NP), mid-turbinate (MT), nasal, throat, or saliva. In symptomatic patients, a recent meta-analysis and guideline from the Infectious Disease Society of America (IDSA) suggests collecting NP or MT or nasal swabs rather than oropharyngeal swabs or saliva alone for diagnostic testing. |
| How can the RT-PCR test be a false negative or a false positive? | False negatives can result when there is inadequate specimen collection as described above, or the viral load is low and the test is unable to detect SARS-CoV-2 at that threshold. Conversely, false positives can result because of cross-reactivity of other coronaviruses, or more commonly, specimen contamination. |
| Do we need negative pressure rooms or air exchanges for aerosol-generating procedures? | Aerosol generation occurs when air accelerates across a fluid surface and creates aerosols that contain virus. However, whether aerosol has infective potential is impacted by many factors, including where the fluid originates (eg, upper airway, lower respiratory tract, upper or lower gastrointestinal tract) the amount of virus present in the aerosols, and how much aerosolization occurs (which may differ according to the procedure). Depending on the type of aerosol-generating procedure and the risk of airborne transmission, PPE at the level of airborne protection may be indicated. In some locations, engineering modification can change a positive pressure room or entire ward to a negative pressure. Having a room with good ventilation, that is, a high rate of air exchanges, is likely to be more important than whether it is at positive or negative pressure. |