Literature DB >> 32734995

Hybridizing clinical translatability with enzyme-free DNA signal amplifiers: recent advances in nucleic acid detection and imaging.

Raina M Borum1, Jesse V Jokerst.   

Abstract

Nucleic acids have become viable prognostic and diagnostic biomarkers for a diverse class of diseases, particularly cancer. However, the low femtomolar to attomolar concentration of nucleic acids in human samples require sensors with excellent detection capabilities; many past and current platforms fall short or are economically difficult. Strand-mediated signal amplifiers such as hybridization chain reaction (HCR) and catalytic hairpin assembly (CHA) are superior methods for detecting trace amounts of biomolecules because one target molecule triggers the continuous production of synthetic double-helical DNA. This cascade event is highly discriminatory to the target via sequence specificity, and it can be coupled with fluorescence, electrochemistry, magnetic moment, and electrochemiluminescence for signal reporting. Here, we review recent advances in enhancing the sensing abilities in HCR and CHA for improved live-cell imaging efficiency, lowered limit of detection, and optimized multiplexity. We further outline the potential for clinical translatability of HCR and CHA by summarizing progress in employing these two tools for in vivo imaging, human sample testing, and sensing-treating dualities. We finally discuss their future prospects and suggest clinically-relevant experiments to supplement further related research.

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Year:  2020        PMID: 32734995      PMCID: PMC7855509          DOI: 10.1039/d0bm00931h

Source DB:  PubMed          Journal:  Biomater Sci        ISSN: 2047-4830            Impact factor:   6.843


  102 in total

Review 1.  Multiplexed detection methods for profiling microRNA expression in biological samples.

Authors:  Alastair W Wark; Hye Jin Lee; Robert M Corn
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  DNA Amplifier-Functionalized Metal-Organic Frameworks for Multiplexed Detection and Imaging of Intracellular mRNA.

Authors:  Hong-Min Meng; Xinxin Shi; Juan Chen; Yuhui Gao; Lingbo Qu; Ke Zhang; Xiao-Bing Zhang; Zhaohui Li
Journal:  ACS Sens       Date:  2020-01-13       Impact factor: 7.711

3.  Dual-Responsive DNA Nanodevice for the Available Imaging of an Apoptotic Signaling Pathway in Situ.

Authors:  Hai Shi; Yanxia Wang; Ji Zheng; Limin Ning; Yue Huang; Anzhi Sheng; Tianshu Chen; Yang Xiang; Xiaoli Zhu; Genxi Li
Journal:  ACS Nano       Date:  2019-10-15       Impact factor: 15.881

Review 4.  Prospects for Therapeutic Targeting of MicroRNAs in Human Immunological Diseases.

Authors:  Marisa E Luck; Stefan A Muljo; Colm B Collins
Journal:  J Immunol       Date:  2015-06-01       Impact factor: 5.422

5.  Fluorescent visual quantitation of cell-secreted sialoglycoconjugates by chemoselective recognition and hybridization chain reaction.

Authors:  Yingying Xiong; Yunlong Chen; Lin Ding; Xiaoqiang Liu; Huangxian Ju
Journal:  Analyst       Date:  2019-07-03       Impact factor: 4.616

Review 6.  Shedding microvesicles: artefacts no more.

Authors:  Emanuele Cocucci; Gabriella Racchetti; Jacopo Meldolesi
Journal:  Trends Cell Biol       Date:  2009-01-12       Impact factor: 20.808

7.  Urinary cell-free DNA is a versatile analyte for monitoring infections of the urinary tract.

Authors:  Philip Burnham; Darshana Dadhania; Michael Heyang; Fanny Chen; Lars F Westblade; Manikkam Suthanthiran; John Richard Lee; Iwijn De Vlaminck
Journal:  Nat Commun       Date:  2018-06-20       Impact factor: 14.919

8.  An all-in-one homogeneous DNA walking nanomachine and its application for intracellular analysis of miRNA.

Authors:  Muren Hu; Dongsheng Mao; Xiaohao Liu; Lingjie Ren; Mengru Zhou; Xiaoxia Chen; Xiaoli Zhu
Journal:  Theranostics       Date:  2019-08-14       Impact factor: 11.556

9.  Diagnostic applications of nucleic acid circuits.

Authors:  Cheulhee Jung; Andrew D Ellington
Journal:  Acc Chem Res       Date:  2014-05-14       Impact factor: 22.384

10.  Catalytic hairpin assembly gel assay for multiple and sensitive microRNA detection.

Authors:  Wenhao Dai; Jing Zhang; Xiangdan Meng; Jie He; Kai Zhang; Yu Cao; Dongdong Wang; Haifeng Dong; Xueji Zhang
Journal:  Theranostics       Date:  2018-04-03       Impact factor: 11.556

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  5 in total

1.  A simple "signal off-on" fluorescence nanoplatform for the label-free quantification of exosome-derived microRNA-21 in lung cancer plasma.

Authors:  Jinlan Wei; Sitian He; Yanhua Mao; Longjie Wu; Xinlian Liu; Clement Yaw Effah; Hongchao Guo; Yongjun Wu
Journal:  Mikrochim Acta       Date:  2021-10-29       Impact factor: 5.833

2.  A Photoacoustic Contrast Agent for miR-21 via NIR Fluorescent Hybridization Chain Reaction.

Authors:  Raina M Borum; Colman Moore; Soo Khim Chan; Nicole F Steinmetz; Jesse V Jokerst
Journal:  Bioconjug Chem       Date:  2021-08-18       Impact factor: 6.069

3.  Multiple amplification-based fluorometric aptasensor for highly sensitive detection of Staphylococcus aureus.

Authors:  Wei Chen; Yanke Zhang; Qingteng Lai; Youzhen Li; Zhengchun Liu
Journal:  Appl Microbiol Biotechnol       Date:  2022-09-05       Impact factor: 5.560

4.  Ultrasmall gold nanorod-polydopamine hybrids for enhanced photoacoustic imaging and photothermal therapy in second near-infrared window.

Authors:  Wonjun Yim; Raina M Borum; Jiajing Zhou; Yash Mantri; Zhuohong Wu; Jingcheng Zhou; Zhicheng Jin; Matthew Creyer; Jesse V Jokerst
Journal:  Nanotheranostics       Date:  2022-01-01

Review 5.  Novel nucleic acid origami structures and conventional molecular beacon-based platforms: a comparison in biosensing applications.

Authors:  Noemi Bellassai; Roberta D'Agata; Giuseppe Spoto
Journal:  Anal Bioanal Chem       Date:  2021-04-06       Impact factor: 4.142

  5 in total

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