Literature DB >> 32734275

Reproducibility of Segmentation-based Myocardial Radiomic Features with Cardiac MRI.

Jihye Jang1, Long H Ngo1, Jennifer Mancio1, Selcuk Kucukseymen1, Jennifer Rodriguez1, Patrick Pierce1, Beth Goddu1, Reza Nezafat1.   

Abstract

PURPOSE: To investigate reproducibility of myocardial radiomic features with cardiac MRI.
MATERIALS AND METHODS: Test-retest studies were performed with a 3-T MRI system using commonly used cardiac MRI sequences of cine balanced steady-state free precession (cine bSSFP), T1-weighted and T2-weighted imaging, and quantitative T1 and T2 mapping in phantom experiments and 10 healthy participants (mean ± standard deviation age, 29 years ± 13). In addition, this study assessed repeatability in 51 patients (56 years ± 14) who underwent imaging twice during the same session. Three readers independently delineated the myocardium to investigate inter- and intraobserver reproducibility of radiomic features. A total of 1023 radiomic features were extracted by using PyRadiomics (https://pyradiomics.readthedocs.io/) with 11 image filters and six feature families. The intraclass correlation coefficient (ICC) was estimated to assess reproducibility and repeatability, and features with ICCs greater than or equal to 0.8 were considered reproducible.
RESULTS: Different reproducibility patterns were observed among sequences in in vivo test-retest studies. In cine bSSFP, the gray-level run-length matrix was the most reproducible feature family, and the wavelet low-pass filter applied horizontally and vertically was the most reproducible image filter. In T1 and T2 maps, intensity-based statistics (first-order) and gray-level co-occurrence matrix features were the most reproducible feature families, without a dominant reproducible image filter. Across all sequences, gray-level nonuniformity was the most frequently identified reproducible feature name. In inter- and intraobserver reproducibility studies, respectively, only 32%-47% and 61%-73% of features were identified as reproducible.
CONCLUSION: Only a small subset of myocardial radiomic features was reproducible, and these reproducible radiomic features varied among different sequences. Supplemental material is available for this article. © RSNA, 2020See also the commentary by Leiner in this issue. 2020 by the Radiological Society of North America, Inc.

Entities:  

Year:  2020        PMID: 32734275      PMCID: PMC7377242          DOI: 10.1148/ryct.2020190216

Source DB:  PubMed          Journal:  Radiol Cardiothorac Imaging        ISSN: 2638-6135


  18 in total

1.  Robustness and Reproducibility of Radiomics in Magnetic Resonance Imaging: A Phantom Study.

Authors:  Bettina Baeßler; Kilian Weiss; Daniel Pinto Dos Santos
Journal:  Invest Radiol       Date:  2019-04       Impact factor: 6.016

2.  Reproducibility and Prognosis of Quantitative Features Extracted from CT Images.

Authors:  Yoganand Balagurunathan; Yuhua Gu; Hua Wang; Virendra Kumar; Olya Grove; Sam Hawkins; Jongphil Kim; Dmitry B Goldgof; Lawrence O Hall; Robert A Gatenby; Robert J Gillies
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

3.  Stability of FDG-PET Radiomics features: an integrated analysis of test-retest and inter-observer variability.

Authors:  Ralph T H Leijenaar; Sara Carvalho; Emmanuel Rios Velazquez; Wouter J C van Elmpt; Chintan Parmar; Otto S Hoekstra; Corneline J Hoekstra; Ronald Boellaard; André L A J Dekker; Robert J Gillies; Hugo J W L Aerts; Philippe Lambin
Journal:  Acta Oncol       Date:  2013-09-09       Impact factor: 4.089

4.  Rectal Cancer: Assessment of Neoadjuvant Chemoradiation Outcome based on Radiomics of Multiparametric MRI.

Authors:  Ke Nie; Liming Shi; Qin Chen; Xi Hu; Salma K Jabbour; Ning Yue; Tianye Niu; Xiaonan Sun
Journal:  Clin Cancer Res       Date:  2016-05-16       Impact factor: 12.531

5.  Computational Radiomics System to Decode the Radiographic Phenotype.

Authors:  Joost J M van Griethuysen; Andriy Fedorov; Chintan Parmar; Ahmed Hosny; Nicole Aucoin; Vivek Narayan; Regina G H Beets-Tan; Jean-Christophe Fillion-Robin; Steve Pieper; Hugo J W L Aerts
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

6.  Robust Radiomics feature quantification using semiautomatic volumetric segmentation.

Authors:  Chintan Parmar; Emmanuel Rios Velazquez; Ralph Leijenaar; Mohammed Jermoumi; Sara Carvalho; Raymond H Mak; Sushmita Mitra; B Uma Shankar; Ron Kikinis; Benjamin Haibe-Kains; Philippe Lambin; Hugo J W L Aerts
Journal:  PLoS One       Date:  2014-07-15       Impact factor: 3.240

7.  A Study on the Basic Criteria for Selecting Heterogeneity Parameters of F18-FDG PET Images.

Authors:  Attila Forgacs; Hermann Pall Jonsson; Magnus Dahlbom; Freddie Daver; Matthew D DiFranco; Gabor Opposits; Aron K Krizsan; Ildiko Garai; Johannes Czernin; Jozsef Varga; Lajos Tron; Laszlo Balkay
Journal:  PLoS One       Date:  2016-10-13       Impact factor: 3.240

8.  Repeatability and Reproducibility of Radiomic Features: A Systematic Review.

Authors:  Alberto Traverso; Leonard Wee; Andre Dekker; Robert Gillies
Journal:  Int J Radiat Oncol Biol Phys       Date:  2018-06-05       Impact factor: 7.038

9.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

10.  Radiomic feature clusters and prognostic signatures specific for Lung and Head & Neck cancer.

Authors:  Chintan Parmar; Ralph T H Leijenaar; Patrick Grossmann; Emmanuel Rios Velazquez; Johan Bussink; Derek Rietveld; Michelle M Rietbergen; Benjamin Haibe-Kains; Philippe Lambin; Hugo J W L Aerts
Journal:  Sci Rep       Date:  2015-06-05       Impact factor: 4.379

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  12 in total

1.  Radiomics in Cardiac MRI: Sisyphean Struggle or Close to the Summit of Olympus?

Authors:  Tim Leiner
Journal:  Radiol Cardiothorac Imaging       Date:  2020-06-25

2.  Quality of science and reporting for radiomics in cardiac magnetic resonance imaging studies: a systematic review.

Authors:  Suyon Chang; Kyunghwa Han; Young Joo Suh; Byoung Wook Choi
Journal:  Eur Radiol       Date:  2022-03-01       Impact factor: 5.315

3.  Image resampling and discretization effect on the estimate of myocardial radiomic features from T1 and T2 mapping in hypertrophic cardiomyopathy.

Authors:  Daniela Marfisi; Carlo Tessa; Chiara Marzi; Jacopo Del Meglio; Stefania Linsalata; Rita Borgheresi; Alessio Lilli; Riccardo Lazzarini; Luca Salvatori; Claudio Vignali; Andrea Barucci; Mario Mascalchi; Giancarlo Casolo; Stefano Diciotti; Antonio Claudio Traino; Marco Giannelli
Journal:  Sci Rep       Date:  2022-06-17       Impact factor: 4.996

4.  Sensitivity of Myocardial Radiomic Features to Imaging Parameters in Cardiac MR Imaging.

Authors:  Jihye Jang; Hossam El-Rewaidy; Long H Ngo; Jennifer Mancio; Ibolya Csecs; Jennifer Rodriguez; Patrick Pierce; Beth Goddu; Ulf Neisius; Warren Manning; Reza Nezafat
Journal:  J Magn Reson Imaging       Date:  2021-03-01       Impact factor: 5.119

5.  Machine learning phenotyping of scarred myocardium from cine in hypertrophic cardiomyopathy.

Authors:  Jennifer Mancio; Farhad Pashakhanloo; Hossam El-Rewaidy; Jihye Jang; Gargi Joshi; Ibolya Csecs; Long Ngo; Ethan Rowin; Warren Manning; Martin Maron; Reza Nezafat
Journal:  Eur Heart J Cardiovasc Imaging       Date:  2022-03-22       Impact factor: 9.130

6.  Repeatability of Cardiac Magnetic Resonance Radiomics: A Multi-Centre Multi-Vendor Test-Retest Study.

Authors:  Zahra Raisi-Estabragh; Polyxeni Gkontra; Akshay Jaggi; Jackie Cooper; João Augusto; Anish N Bhuva; Rhodri H Davies; Charlotte H Manisty; James C Moon; Patricia B Munroe; Nicholas C Harvey; Karim Lekadir; Steffen E Petersen
Journal:  Front Cardiovasc Med       Date:  2020-12-02

7.  Machine learning of native T1 mapping radiomics for classification of hypertrophic cardiomyopathy phenotypes.

Authors:  Alexios S Antonopoulos; Maria Boutsikou; Spyridon Simantiris; Andreas Angelopoulos; George Lazaros; Ioannis Panagiotopoulos; Evangelos Oikonomou; Mikela Kanoupaki; Dimitris Tousoulis; Raad H Mohiaddin; Konstantinos Tsioufis; Charalambos Vlachopoulos
Journal:  Sci Rep       Date:  2021-12-08       Impact factor: 4.379

8.  Radiomics of Patients with Locally Advanced Rectal Cancer: Effect of Preprocessing on Features Estimation from Computed Tomography Imaging.

Authors:  Stefania Linsalata; Rita Borgheresi; Daniela Marfisi; Patrizio Barca; Aldo Sainato; Fabiola Paiar; Emanuele Neri; Antonio Claudio Traino; Marco Giannelli
Journal:  Biomed Res Int       Date:  2022-03-20       Impact factor: 3.411

9.  Acquisition repeatability of MRI radiomics features in the head and neck: a dual-3D-sequence multi-scan study.

Authors:  Cindy Xue; Jing Yuan; Yihang Zhou; Oi Lei Wong; Kin Yin Cheung; Siu Ki Yu
Journal:  Vis Comput Ind Biomed Art       Date:  2022-04-01

10.  Radiomics side experiments and DAFIT approach in identifying pulmonary hypertension using Cardiac MRI derived radiomics based machine learning models.

Authors:  Sarv Priya; Tanya Aggarwal; Caitlin Ward; Girish Bathla; Mathews Jacob; Alicia Gerke; Eric A Hoffman; Prashant Nagpal
Journal:  Sci Rep       Date:  2021-06-16       Impact factor: 4.996

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