Literature DB >> 32725600

Metagenomic profiling of bacterial diversity and community structure in termite mounds and surrounding soils.

Ben Jesuorsemwen Enagbonma1, Caroline Fadeke Ajilogba1, Olubukola Oluranti Babalola2.   

Abstract

The study focuses on analysis of the compositional and diversity of bacteria in termite mound soils in comparison with the surrounding soils to verify the assertion that the high nutrient concentrations in termite mound soils influence a complex diversity of microorganisms. Here, whole DNA was extracted from soil samples collected from termite mounds and their surrounding soils which were 10 m apart and subsequently, sequenced using shotgun metagenomic approach. Our findings showed that both environments have several soil bacterial phyla in common. However, Proteobacteria and Actinobacteria significantly dominated the termite mound soils and the surrounding soils, respectively, with Tenericutes peculiar to only the termite mound soils. Furthermore, Bergeyella, Gloeothece, Thalassospira, and Glaciecola genera were exclusively identified in the termite mound soil samples. Diversity analysis showed that bacterial composition was different among the four sites (phyla level). This study also revealed a lot of unclassified groups of bacteria and this could point to the presence of potentially novel species. The differences observed in the bacterial structure and diversity from this study may be ascribed to variances in the physicochemical nature existing between the two environments. Mapping out schemes to culture these unclassified groups of bacteria discovered from this study would possibly set the platform for the discovery of novel bacteria for biotechnological applications.

Keywords:  Amplicon sequencing; Bacterial composition; Illumina platforms; Termitarium; Whole genome

Mesh:

Substances:

Year:  2020        PMID: 32725600     DOI: 10.1007/s00203-020-01994-w

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  6 in total

1.  Termite gas emissions select for hydrogenotrophic microbial communities in termite mounds.

Authors:  Eleonora Chiri; Philipp A Nauer; Rachael Lappan; Thanavit Jirapanjawat; David W Waite; Kim M Handley; Philip Hugenholtz; Perran L M Cook; Stefan K Arndt; Chris Greening
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

2.  Comparative study of microbial structure and functional profile of sunflower rhizosphere grown in two fields.

Authors:  Blessing Chidinma Nwachukwu; Ayansina Segun Ayangbenro; Olubukola Oluranti Babalola
Journal:  BMC Microbiol       Date:  2021-12-09       Impact factor: 3.605

3.  Effects of soil properties and carbon substrates on bacterial diversity of two sunflower farms.

Authors:  Blessing Chidinma Nwachukwu; Ayansina Segun Ayangbenro; Olubukola Oluranti Babalola
Journal:  AMB Express       Date:  2022-04-23       Impact factor: 4.126

4.  Trichoderma-Derived Pentapeptides from the Infected Nest Mycobiome of the Subterranean Termite Coptotermes testaceus.

Authors:  Markus Oberpaul; Stephan Brinkmann; Marius S Spohn; Sanja Mihajlovic; Michael Marner; Maria A Patras; Luigi Toti; Michael Kurz; Peter E Hammann; Andreas Vilcinskas; Jens Glaeser; Till F Schäberle
Journal:  Chembiochem       Date:  2022-04-01       Impact factor: 3.461

5.  Metagenomic Insight into the Community Structure of Maize-Rhizosphere Bacteria as Predicted by Different Environmental Factors and Their Functioning within Plant Proximity.

Authors:  Saheed Adekunle Akinola; Ayansina Segun Ayangbenro; Olubukola Oluranti Babalola
Journal:  Microorganisms       Date:  2021-06-30

6.  Comparative Metagenomic Study of Rhizospheric and Bulk Mercury-Contaminated Soils in the Mining District of Almadén.

Authors:  Daniel González; Marina Robas; Vanesa Fernández; Marta Bárcena; Agustín Probanza; Pedro A Jiménez
Journal:  Front Microbiol       Date:  2022-03-07       Impact factor: 5.640

  6 in total

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