| Literature DB >> 32723293 |
Dora Koller1,2,3, Eniko Kubinyi4,5, Zsuzsanna Elek6, Helga Nemeth6, Adam Miklosi4,5, Maria Sasvari-Szekely6, Zsolt Ronai6.
Abstract
BACKGROUND: Although the molecular function of wolframin remains unclear, the lack of this protein is known to cause stress in the endoplasmic reticulum. Some variants in the Wolfram Syndrome 1 gene (WFS1) were associated with various neuropsychiatric disorders in humans, such as aggressiveness, impulsivity and anxiety.Entities:
Keywords: Behavior; Dog; Polymorphism; WFS1; miRNA
Year: 2020 PMID: 32723293 PMCID: PMC7390163 DOI: 10.1186/s12863-020-00879-7
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
Sequencing primers and annealing temperatures used for PCR amplification of dog WFS1 gene regions
| Sequencing primers | Forward primer | Reverse primer | Product lenght (base pairs) | T |
|---|---|---|---|---|
| Primer pair 1 | CACCCCTGCCACATCCGCAA | CGGCCACGTCGACTCCCAAC | 525 | 59 |
| Primer pair 2 | GTCCTGCAGCCCCGGCAATG | GCGACCAGAGGTGTCCGCAG | 531 | 59 |
| Primer pair 3 | GGCCGCGGAGGAGCTATGC | CCACGTCGACTCCCAACGCT | 562 | 60 |
| Primer pair 4 | ACGGCCGCGGAGGAGCTATG | GTTCCTGTGGTGCTGGTGCCC | 537 | 60 |
| Primer pair 5 | CGGAGGAGCTATGCCGCCTGA | GCTGCAGGCAGTTCCTGTGGT | 540 | 60 |
Fig. 1Bone take away test. Photo: courtesy of Judit Vas
Fig. 2Sequence alignment of cfa-miR-1838 ( a), and cfa-miR-8834a ( b) microRNAs and their putative binding sites in the A and G allele of the WFS1 gene
Fig. 3Genotyping of rs852850348 SNP by restriction digestion of PCR amplicons. a shows the principle of the applied genotyping method. Amplicons of A allele were digested with the PvuII enzyme into three fragments with different lengths, while in case of G allele only 2 fragments were generated. b shows the separated fragments of various genotypes as detected by horizontal agarose gel electrophoresis
Allele frequencies of rs852850348 among the six subgroups
| Allele A | Allele G | |
|---|---|---|
| 0.58 | 0.42 | |
| 0.68 | 0.32 | |
| 0.45 | 0.55 | |
| 0.87 | 0.13 | |
| 0.44 | 0.55 | |
| 0.53 | 0.47 |
Fig. 4Variations in rs852850348 genotype distribution among the six subgroups
Fig. 5Luciferase reporter assay of WFS1 3’UTR allelic variants with co-infected cfa-miR-8834a ( a) or cfa-miR-1838 ( b) microRNA
Fig. 6The possible functional role of the WFS1 rs852850348 SNP
Fig. 7WFS1 gene-behaviour associations in border collie dogs