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Literature DB >> 32717667

Methods for detecting introgressed archaic sequences.

Abstract

Analysis of genome sequences from archaic and modern humans have revealed multiple episodes of admixture between highly-diverged population groups. Statistical methods that attempt to localize DNA segments introduced by these events offer a powerful tool to investigate recent human evolution. We review recent advances in methods for detecting introgressed sequences.

Entities: Disease Species

Mesh：

Substances：
DNA

Year: 2020 PMID： 32717667 PMCID： PMC7484293 DOI： 10.1016/j.gde.2020.05.026

Source DB: PubMed Journal: Curr Opin Genet Dev ISSN： 0959-437X Impact factor: 5.578

59 in total

1. The phenotypic legacy of admixture between modern humans and Neandertals.

Authors: Corinne N Simonti; Benjamin Vernot; Lisa Bastarache; Erwin Bottinger; David S Carrell; Rex L Chisholm; David R Crosslin; Scott J Hebbring; Gail P Jarvik; Iftikhar J Kullo; Rongling Li; Jyotishman Pathak; Marylyn D Ritchie; Dan M Roden; Shefali S Verma; Gerard Tromp; Jeffrey D Prato; William S Bush; Joshua M Akey; Joshua C Denny; John A Capra
Journal: Science Date: 2016-02-12 Impact factor: 47.728

2. Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans.

Authors: David Enard; Dmitri A Petrov
Journal: Cell Date: 2018-10-04 Impact factor: 41.582

3. Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals.

Authors: Lu Chen; Aaron B Wolf; Wenqing Fu; Liming Li; Joshua M Akey
Journal: Cell Date: 2020-01-30 Impact factor: 41.582

4. Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation.

Authors: Mayukh Mondal; Ferran Casals; Tina Xu; Giovanni M Dall'Olio; Marc Pybus; Mihai G Netea; David Comas; Hafid Laayouni; Qibin Li; Partha P Majumder; Jaume Bertranpetit
Journal: Nat Genet Date: 2016-07-25 Impact factor: 38.330

5. Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.

Authors: Benjamin Vernot; Serena Tucci; Janet Kelso; Joshua G Schraiber; Aaron B Wolf; Rachel M Gittelman; Michael Dannemann; Steffi Grote; Rajiv C McCoy; Heather Norton; Laura B Scheinfeldt; David A Merriwether; George Koki; Jonathan S Friedlaender; Jon Wakefield; Svante Pääbo; Joshua M Akey
Journal: Science Date: 2016-03-17 Impact factor: 47.728

6. Resurrecting surviving Neandertal lineages from modern human genomes.

Authors: Benjamin Vernot; Joshua M Akey
Journal: Science Date: 2014-01-29 Impact factor: 47.728

7. The GenomeAsia 100K Project enables genetic discoveries across Asia.

Authors:
Journal: Nature Date: 2019-12-04 Impact factor: 49.962

8. The genetic history of Ice Age Europe.

Authors: Qiaomei Fu; Cosimo Posth; Mateja Hajdinjak; Martin Petr; Swapan Mallick; Daniel Fernandes; Anja Furtwängler; Wolfgang Haak; Matthias Meyer; Alissa Mittnik; Birgit Nickel; Alexander Peltzer; Nadin Rohland; Viviane Slon; Sahra Talamo; Iosif Lazaridis; Mark Lipson; Iain Mathieson; Stephan Schiffels; Pontus Skoglund; Anatoly P Derevianko; Nikolai Drozdov; Vyacheslav Slavinsky; Alexander Tsybankov; Renata Grifoni Cremonesi; Francesco Mallegni; Bernard Gély; Eligio Vacca; Manuel R González Morales; Lawrence G Straus; Christine Neugebauer-Maresch; Maria Teschler-Nicola; Silviu Constantin; Oana Teodora Moldovan; Stefano Benazzi; Marco Peresani; Donato Coppola; Martina Lari; Stefano Ricci; Annamaria Ronchitelli; Frédérique Valentin; Corinne Thevenet; Kurt Wehrberger; Dan Grigorescu; Hélène Rougier; Isabelle Crevecoeur; Damien Flas; Patrick Semal; Marcello A Mannino; Christophe Cupillard; Hervé Bocherens; Nicholas J Conard; Katerina Harvati; Vyacheslav Moiseyev; Dorothée G Drucker; Jiří Svoboda; Michael P Richards; David Caramelli; Ron Pinhasi; Janet Kelso; Nick Patterson; Johannes Krause; Svante Pääbo; David Reich
Journal: Nature Date: 2016-05-02 Impact factor: 49.962

Methods for detecting introgressed archaic sequences.

1. The phenotypic legacy of admixture between modern humans and Neandertals.

2. Evidence that RNA Viruses Drove Adaptive Introgression between Neanderthals and Modern Humans.

3. Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals.

4. Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation.

5. Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.

6. Resurrecting surviving Neandertal lineages from modern human genomes.

7. The GenomeAsia 100K Project enables genetic discoveries across Asia.

8. The genetic history of Ice Age Europe.

9. Detecting archaic introgression using an unadmixed outgroup.

10. Limits of long-term selection against Neandertal introgression.

1. Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow.

2. "Archealization" of human brain organoids.