Literature DB >> 32715992

Engineering polymerases for applications in synthetic biology.

Ali Nikoomanzar1, Nicholas Chim1, Eric J Yik1, John C Chaput1,2,3.   

Abstract

DNA polymerases play a central role in biology by transferring genetic information from one generation to the next during cell division. Harnessing the power of these enzymes in the laboratory has fueled an increase in biomedical applications that involve the synthesis, amplification, and sequencing of DNA. However, the high substrate specificity exhibited by most naturally occurring DNA polymerases often precludes their use in practical applications that require modified substrates. Moving beyond natural genetic polymers requires sophisticated enzyme-engineering technologies that can be used to direct the evolution of engineered polymerases that function with tailor-made activities. Such efforts are expected to uniquely drive emerging applications in synthetic biology by enabling the synthesis, replication, and evolution of synthetic genetic polymers with new physicochemical properties.

Entities:  

Keywords:  Aptamers; SELEX; XNAzymes; catalysts; polymerase engineering; synthetic biology; xeno-nucleic acid (XNA)

Mesh:

Substances:

Year:  2020        PMID: 32715992     DOI: 10.1017/S0033583520000050

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  8 in total

1.  Following replicative DNA synthesis by time-resolved X-ray crystallography.

Authors:  Nicholas Chim; Roman A Meza; Anh M Trinh; Kefan Yang; John C Chaput
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

Review 2.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

3.  Transliteration of synthetic genetic enzymes.

Authors:  Yajun Wang; Xiaolin Liu; Mouhamad Shehabat; Nicholas Chim; John C Chaput
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

4.  DNA aptamers inhibit SARS-CoV-2 spike-protein binding to hACE2 by an RBD- independent or dependent approach.

Authors:  Achut Prasad Silwal; Siddhartha Kalpa Samadhi Thennakoon; Satya Prakash Arya; Rick Mason Postema; Raunak Jahan; Chien Minh Tran Phuoc; Xiaohong Tan
Journal:  Theranostics       Date:  2022-07-18       Impact factor: 11.600

5.  Mutant polymerases capable of 2' fluoro-modified nucleic acid synthesis and amplification with improved accuracy.

Authors:  Trevor A Christensen; Kristi Y Lee; Simone Z P Gottlieb; Mikayla B Carrier; Aaron M Leconte
Journal:  RSC Chem Biol       Date:  2022-06-17

6.  In Vitro Selection of an ATP-Binding TNA Aptamer.

Authors:  Li Zhang; John C Chaput
Journal:  Molecules       Date:  2020-09-13       Impact factor: 4.411

Review 7.  Building better polymerases: Engineering the replication of expanded genetic alphabets.

Authors:  Zahra Ouaray; Steven A Benner; Millie M Georgiadis; Nigel G J Richards
Journal:  J Biol Chem       Date:  2020-10-01       Impact factor: 5.157

8.  Fluorinated oil-surfactant mixtures with the density of water: Artificial cells for synthetic biology.

Authors:  Roberto Laos; Steven Benner
Journal:  PLoS One       Date:  2022-01-20       Impact factor: 3.240

  8 in total

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