| Literature DB >> 32714832 |
Antonia Longo1,2,3, Stefan Morscher3, Jaber Malekzadeh Najafababdi1,2, Dominik Jüstel1,2, Christian Zakian1,2, Vasilis Ntziachristos1,2.
Abstract
The Hessian-based Frangi vesselness filter is commonly used to enhance vasculature in optoacoustic (photoacoustic) images, but its accuracy and limitations have never been rigorously assessed. Here we validate the ability of the filter to enhance vessel-like structures in phantoms, and we introduce an experimental approach that uses measurements before and after the administration of gold nanorods (AuNRs) to examine filter performance in vivo. We evaluate the influence of contrast, filter scales, angular tomographic coverage, out-of-plane signals and light fluence on image quality, and gain insight into the performance of the filter. We observe the generation of artifactual structures that can be misinterpreted as vessels and provide recommendations to ensure appropriate use of Frangi and other vesselness filters and avoid misinterpretation of post-processed optoacoustic images.Entities:
Keywords: Frangi filter accuracy; Gold nanorods for vessels enhancement; Image quality improvement; Optoacoustic imaging; Quality assessment of vesselness filter; Vessel segmentation
Year: 2020 PMID: 32714832 PMCID: PMC7369359 DOI: 10.1016/j.pacs.2020.100200
Source DB: PubMed Journal: Photoacoustics ISSN: 2213-5979
Fig. 1Effect of different optoacoustic contrast and filter scales on the performance of the HFV filter. The top panel shows the reconstructed optoacoustic image of a mouse abdomen section (a) and HFV filtered image for scales 0.5 (c), 2.0 (d), 3.0 (e) and 4.0 (f), respectively, to enhance vessel diameters ranging from one half to six times the system resolution of 165 um. Resulting multi-scale blend (average) of the HFV filtered images of the mouse abdomen (b). The bottom panel shows the experimental validation of the HFV filter application to optoacoustic phantom images with different optoacoustic contrast CI (g, h, i) and corresponding HFV filtered images (j, k, l). The insets at the upper left of panels (g), (h) and (i) show the vessel-like printed papers used to simulate different optoacoustic absorption (black and grey) and the corresponding absorbing agar phantoms. HFV: Hessian-based Frangi vesselness, SSIM: structure similarity index, CI: contrast index.
Fig. 2Effect of different system characteristics on the performance of the HFV filter in experimental optoacoustic phantoms. Limited tomographic view (a, b), presence of an air cavity (c, d), out-of-plane signal (e, f), different filter scales and contrast variation in a large vessel (g). Arrows show artifacts enhancement after HFV filter.
Fig. 3Breathing correction and kinetics of AuNRs perfusion optoacoustic images of mouse abdomen showing the left and right kidneys (arrows) at four different breathing points: (a) expiratory pause, (b) inhalation, (c) respiratory peak and (d) exhalation. The SSIM was used here as a metric to quantify the breathing motion between the expiratory frame (reference) and the other frames. (e) Normalized optoacoustic signal in the mouse abdomen across the injection time point showing breathing motion artifacts. Animals were injected with AuNRs over the indicated interval in order to enhance vessels. (f) Visualization of the AuNR perfusion in the selected expiratory frames after breathing correction.
Fig. 4unfiltered optoacoustic images of the mouse abdomen. The boxes indicate regions of interest also analysed as zoomed-in views. Vessel-enhanced images (Diff), generated as described in the text, were compared with the optimized HFV filtered pre-injection image (HFV Pre) and HFV-filtered difference image (HFV Diff) in terms of the structure similarity index (SSIM). Middle row: Zoomed-in view of a region of interest in the left kidney with CI 88 dB. Enhancement of real vessels after HFV filter are marked with white arrows. Bottom rows: Zoomed-in view of a region closer to the stomach with CI 83 dB. Due to low OA contrast, HFV filter creates false vessel-like structures from the background (green circle) or fails to enhance true vessels (purple circle).