| Literature DB >> 32714263 |
Diana A Olszewska1,2,3, Allan McCarthy1,4, Alexandra I Soto-Beasley2, Ronald L Walton2, Brian Magennis1, Russell L McLaughlin5, Orla Hardiman6,7, Owen A Ross2,3,8, Tim Lynch1,3.
Abstract
Multiple studies implicate heterozygous GBA mutations as a major genetic risk factor for Parkinson's disease (PD); however, the frequency of mutations has never been examined in PD patients from the Irish population. We prospectively recruited 314 unrelated Irish PD patients (UK Brain Bank Criteria) and 96 Irish healthy controls (without any signs or family history of parkinsonism) attending. The Dublin Neurological Institute (DNI). Complete exon GBA Sanger sequencing analysis with flanking intronic regions was performed. The GBA carrier frequency was 8.3% in PD and 3.1% in controls. We identified a number of potentially pathogenic mutations including a p.G195E substitution and a p.G377C variant, previously described in a case study of Gaucher's disease in Ireland. On genotype-phenotype assessment hallucinations, dyskinesia, and dystonia were more prevalent in GBA-PD. The genetic etiology of PD in Ireland differs from the continental Europe as seen with the lower LRRK2 and higher than in most European countries GBA mutation frequency. Determining genetic risk factors in different ethnicities will be critical for future personalized therapeutic approach.Entities:
Keywords: GBA; Ireland; Parkinson's disease; glucocerebrosidase; sequencing
Year: 2020 PMID: 32714263 PMCID: PMC7344206 DOI: 10.3389/fneur.2020.00527
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Pathogenicity prediction results for GBA genotypes found in Irish Parkinson's disease (PD) patients and controls: pathogenic/risk variants, predicted pathogenic, and VUS genotypes.
| E365K | E326K | G > A | rs2230288 | 8 | Path | Benign | Tolerated | Path | Risk | Risk | Risk |
| T408M | T369M | C > T | rs75548401 | 8 | Polymorphism | Benign | Tolerated | VUS | VUS | Risk | Risk |
| F255Y | F216Y | T > A | rs74500255 | 7 | Path | Probably Path | Tolerated | Path | Path | Path | Path |
| N409S | N370S | A > G | rs76763715 | 9 | Path | Possibly Path | Path | Path | Path | Path | Path |
| D448H | D409H | G > C | rs1064651 | 9 | Path | Benign | Tolerated | Path | Path | Path | Path |
| L483P | RecNcil | T > C | rs421016 | 10 | Path | Path | Path/Tolerated | Path | Path | Path | Path |
| A495P | Recombinant | G > C | rs368060 | ||||||||
| V499V | G > C | rs1135675 | |||||||||
| G416C | G377C | G > T | No rs | 9 | Path | Probably Path | Path | N/A | N/A | 1 patient Gaucher's | Predicted Path |
| G234E | G195E | G > A | rs74462743 | 6 | Path | Probably Path | Path | SNV | N/A | 1 patient Gaucher's | VUS |
| R301H | G > A | rs140955685 | 7 | Polymorphism | Benign | Tolerated | SNV | N/A | VUS | ||
| R368C | C > T | rs374306700 | 8 | Path | Probably Path | Path | VUS | VUS | VUS | ||
GBA Protein (−39aa) the conventional nomenclature for GBA alleles following Human Genome Variation Society (HGVS) recommendation referring to the processed protein and excluding the 39-residue signal peptide. GBA Protein, the alternative nomenclature; Path, pathogenic; VUS, variant of unknown significance; SNV, single-nucleotide variant.
Pathogenic/risk variants and variant of unknown significance (VUS) genotypes, carrier frequency, and minor allele frequency in Irish Parkinson's disease (PD) patients and controls and comparison to ExAC and GnomAD databases.
| T408M | T369M | C > T | rs75548401 | 8 | 6/0 | 1.92% | 0.96% | 4/0 | 2.37% | 1.18% | 0.98% | 0.94% |
| E365K | E326K | G > A | rs2230288 | 8 | 12/1 | 4.14% | 2.23% | 3/1 | 2.37% | 1.48% | 1.20% | 1.23% |
| F255Y | F216Y | T > A | rs74500255 | 7 | 1/0 | 0.33% | 0.16% | 0/0 | 0% | 0% | 0.02% | 0.00% |
| N409S | N370S | A > G | rs76763715 | 9 | 3/0 | 0.96% | 0.48% | 0/0 | 0% | 0% | 0.36% | 0.20% |
| D448H | D409H | G > C | rs1064651 | 9 | 1/0 | 0.32% | 0.16% | 0/0 | 0% | 0% | 0.01% | 0.02% |
| L483P | RecNcilrecombinant | T > C | rs421016 | 10 | 3/0 | 0.96% | 0.48% | 0/0 | 0% | 0% | 0.39% | 0.14% |
| A495P | G > C | rs368060 | 3/0 | 0.96% | 0.48% | 0/0 | 0% | 0% | 0.01% | 0.01% | ||
| V499V | G > C | rs1135675 | 3/0 | 0.96% | 0.48% | 0/0 | 0% | 0% | 0.02% | 0.03% | ||
| G416C | G377C | G > T | No rs | 9 | 1/0 | 0.32% | 0.16% | 0/0 | 0% | 0% | Not reported | Not reported |
| G234E | G195E | G > A | rs74462743 | 6 | 1/0 | 0.32% | 0.16% | 0/0 | 0% | 0% | – | 0.00% |
| R301H | G > A | rs140955685 | 7 | 0/1 | 0.32% | 0.32% | 0/0 | 0% | 0% | 0.01% | 0.02% | |
| R368C | C > T | rs374306700 | 8 | 1/0 | 0.32% | 0.16% | 0/0 | 0% | 0% | 0.00% | 0.00% | |
GBA Protein (−39aa) the conventional nomenclature for GBA alleles following Human Genome Variation Society (HGVS) recommendation referring to the processed protein and excluding the 39-residue signal peptide. GBA Protein, the alternative nomenclature; MAF, minor allele frequency; het, heterozygote; homo, homozygote; n, number.
Genotype–phenotype correlation in risk variants of GBA carriers with Parkinson's disease (PD).
| 1 | E326K/wt | M | – | 69 | 62 | Bradykinesia | 7 | PIGD | 51 | 2 | + | Dyskinesia wearing off | – | – |
| 2 | E326K/wt | M | – | 64 | 59 | Bradykinesia | 5 | PIGD | 10 | 2 | – | – | – | – |
| 3 | E326K/wt | M | – | 51 | 43 | Tremor | 8 | Tremor | 15 | 1 | – | Wearing off | – | – |
| 4 | E326K/wt | F | – | 75 | 73 | Tremor | 2 | Tremor | 17 | 2 | + | – | – | – |
| 5 | E326K/wt | F | + | 72 | 50 | Tremor | 22 | PIGD | 25 | 3 | + | Dyskinesia wearing off dystonia | + | - |
| 6 | E326K/wt | F | + | 64 | 64 | Tremor | 0 | Tremor | 13 | 1 | – | – | ||
| 7 | E326K/wt | F | + | 71 | 65 | Pain | 6 | PIGD | 24 | 2 | – | Dyskinesia | ||
| 8 | E326K/wt | M | + | 65 | 43 | Gait | 22 | Mixed | 9 | 2 | PDD | Dyskinesia wearing off | – | – |
| 9 | E326K/wt | F | + | 61 | 56 | Writing | 5 | Tremor | 20 | 1 | – | – | – | – |
| 10 | E326K/wt | F | + | 62 | 58 | Tremor | 4 | Tremor | 14 | 1 | – | – | – | – |
| 11 | E326K/E326K | F | – | 65 | 49 | Bradykinesia | 16 | PIGD | 20 | 2 | + | Dyskinesia | + | + |
| 12 | E326K/T369M | F | – | 77 | 62 | Tremor | 15 | Mixed | missing | 3 | PDD | Dyskinesia wearing off | + | + |
| 13 | E326K/G377C | M | + | 54 | 39 | Tremor | 15 | Mixed | 7 | 1 | – | Dyskinesia Wearing off | – | – |
| 14 | T369M/wt | M | – | 54 | 44 | Tremor | 10 | Tremor | 22 | 2 | – | – | – | – |
| 15 | T369M/wt | M | – | 79 | 69 | Tremor | 10 | Tremor | 54 | 3 | – | Dyskinesia wearing off | – | – |
| 16 | T369M/wt | M | – | 86 | 61 | Tremor | 25 | Tremor | 44 | 2 | – | – | + | – |
| 17 | T369M/wt | F | – | 61 | 55 | Tremor | 6 | Tremor | 27 | 2 | – | – | – | – |
| 18 | T369M/wt | M | + | 38 | 32 | Bradykinesia | 6 | PIGD | 36 | 2 | – | Dyskinesia wearing off dystonia | – | – |
FOG, freezing of gait; H&Y, Hoehn and Yahr score.
Genotype–phenotype correlation in GBA pathogenic variants and variants of unknown significance carriers with Parkinson's disease (PD).
| 19 | F216Y/wt | M | + | 56 | 53 | Tremor | 3 | Tremor | 28 | 2 | – | – | – | – |
| 20 | N370S/wt | F | + | 82 | 67 | Tremor | 15 | Tremor | 31 | 2 | + | – | – | – |
| 21 | N370S/wt | M | – | 64 | 61 | Tremor | 2.5 | Mixed | 46 | 2 | PDD | – | – | – |
| 22 | N370S/wt | F | + | 78 | 70 | Tremor | 8 | PIGD | 9 | 2 | – | Dyskinesia | – | – |
| 23 | RecNcil | F | – | 61 | 56 | Tremor | 5 | Tremor | 9 | 2 | – | – | – | – |
| 24 | RecNcil | F | + | 59 | 54 | Tremor | 5 | PIGD | missing | 2 | PDD | Wearing off | + | - |
| 25 | RecNcil | F | + | 33 | 30 | Bradykinesia | 3 | Mixed | 13 | 1 | – | Dyskinesia wearing off dystonia | – | – |
| 26 | D409H/wt | M | + | 64 | 60 | Tremor | 3.5 | Tremor | 24 | 1 | – | Wearing off | – | – |
| 27 | R368C/wt | M | – | 61 | 55 | Bradykinesia | 7 | PIGD | 28 | 2 | – | – | – | – |
| 28 | R301H/R301H | M | – | 59 | 57 | Bradykinesia | 2.5 | PIGD | 37 | 3 | – | – | – | – |
| 29 | G195E/wt | M | + | 69 | 54 | Tremor | 15 | Tremor | 28 | 1 | + | – | – | – |
FOG, freezing of gait; H&Y, Hoehn and Yahr scale.
Figure 1Family pedigree of the patient with GBA p.G195E variant in exon 6, rs74462743: red, affected with Parkinson's disease (PD); blue, tested and positive for p.G195E variant; green, tested and negative for p.G195E variant; arrow, proband; diagonal line, deceased.
Figure 2Family pedigree of the patient with GBA p.E326K variant in exon 8 and p.G377C variant in exon 9: red, affected with Parkinson's disease (PD); blue, tested and positive for p.E326K/G377C variant; arrow, proband; diagonal line, deceased.
Genotype–phenotype assessment in GBA pathogenic/risk variants carriers with Parkinson's disease.
| Gender | |||
| Women | 14 (53.8%) | 104 (36.5%) | |
| Men | 12 (46.2%) | 181 (63.5%) | 0.08 |
| Median (range) | Median (range) | ||
| Age at assessment | 64 (33–86) | 67 (32–89) | 0.58 |
| Age at onset | 57 (30–73) | 57 (16–85) | 0.68 |
| Early onset PD <50 | 7 (26.9%) | 74 (26%) | 0.91 |
| Median (range) | Median (range) | ||
| Disease duration | 6 (0–25) | 7 (0.5–50) | 0.95 |
| Family history | |||
| Yes | 14 (53.8%) | 158 (55.4%) | |
| No | 12 (46.2%) | 127 (44.6%) | 0.88 |
| Cognition | |||
| MCI-PD | 5 (19.2%) | 54 (18.9%) | 1 |
| PDD | 4 (15.4%) | 31 (10.9%) | 0.51 |
| Hallucinations | 6 (23.1%) | 20 (7%) | |
| Motor complications | 14 (53.8%) | 122 (42.8%) | 0.27 |
| Wearing off | 11 (42.3%) | 92 (32.3%) | 0.29 |
| Dyskinesia | 11 (42.3%) | 51 (17.9%) | |
| Dystonia4 | 3 (11.5 %) | 3 (1.1%) | |
| Freezing of gait | 3 (11.5%) | 31 (10.9%) | 1 |
| DBS | 1 (3.8%) | 6 (2.1%) | 1 |
| Median (range) | Median (range) | ||
| UPDRS-III score | 21 (7–54) | 22 (3–83) | 0.18 |
| UPDRS-III categories | |||
| <32 (mild) | 19 (79.2%) | 224 (80.6%) | |
| 33–58 (moderate) | 5 (20.5%) | 52 (18.7%) | |
| > 58 (severe) | 0 (0%) | 2 (0.7%) | 0.1 |
| Falls | 3 (11.5%) | 25 (8.8%) | 0.71 |
| Medications | |||
| Levodopa | 22 (84.6%) | 230 (80.7%) | 0.79 |
| MAOBI | 16 (61.5%) | 169 (59.3%) | 0.82 |
| Dopamine agonists | 11 (42.3%) | 131 (46%) | 0.72 |
| Madopar | |||
| (levodopa+benserazide) | 1 (3.8%) | 26 (9.1%) | 0.7 |
| Anticholinergics | 1 (3.8%) | 23 (8.1%) | 0.51 |
| Amantadine | 2 (7.7%) | 28 (9.8%) | 0.76 |
| Duodopa | 0 (0%) | 4 (1.4%) | 1 |
| Apomorphine | 1 (12.5%) | 7 (2.5%) | 1 |
| Subtype | |||
| Tremor-predominant | 13 (50%) | 161 (56.5%) | 0.52 |
| PIGD | 8 (30.8%) | 97 (34%) | 0.73 |
| Mixed | 5 (19.2%) | 27 (9.5%) | 0.16 |
| First symptom | |||
| Tremor | 18 (69.2%) | 190 (66.7%) | 0.79 |
| Bradykinesia | 5 (19.2%) | 59 (20.7%) | 0.85 |
| Stiffness | 0 (0%) | 6 (2.1%) | 0.67 |
| Writing difficulties | 1 (3.8%) | 5 (1.8%) | 1 |
| Pain | 1 (3.8%) | 1 (0.4%) | 0.16 |
| Speech problems | 0 (0%) | 2 (0.7%) | 1 |
| Gait problems (all) | 1 (3.8%) | 22 (7.7%) | 1 |
| Loss of arm swing | 0 (0%) | 3 (1.1%) | 1 |
| Shuffling | 0 (0%) | 12 (4.2%) | 0.4 |
| Dragging a leg | 1 (3.8%) | 6 (2.1%) | 1 |
| Balance problems | 0 (0%) | 1 (0.4%) | 1 |
Pearson chi square test,
Fisher exact test,
Mann–Whitney U-test,
Linear by linear Armitage exact trend test.
Bold value indicates statistically significant.