Literature DB >> 32711442

Effect of Zebularine in Comparison to and in Combination with Trichostatin A on CIP/KIP Family (p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2), DNMTs (DNMT1, DNMT3a, and DNMT3b), Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) Gene Expression, Cell Growth Inhibition and Apoptosis Induction in Colon Cancer LS 174T Cell Line.

Masumeh Sanaei1, Fraidoon Kavoosi1.   

Abstract

BACKGROUND: A pattern of epigenetic modifications and changes, DNA methylation and histone modification, is central to many human cancers. A variety of tumor suppressor genes (TSGs) have been demonstrated to be silenced because of histone deacetylation and DNA hypermethylation in several cancers. Recent in vitro studies have shown that two known mechanisms of epigenetic alteration consisting of methylation and histone deacetylation seem to be the best candidate mechanisms for inactivation of CIP/KIP family (p21Cip1/Waf1/Sdi1, and p27Kip1) in numerous cancers. Numerous investigations have indicated that DNA demethylating and histone deacetylase inhibitors (HDACIs) can restore the CIP/KIP family gene expression. Previously, we evaluated the effect of trichostatin A (TSA) and 5-aza-2'-deoxycytidine (5-AZA-CdR) on hepatocellular carcinoma (HCC). The present study was designed to investigate the effect of zebularine in comparison to and in combination with trichostatin A on p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a and DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene expression, cell growth inhibition and apoptosis induction in colon cancer LS 174T cell line.
MATERIALS AND METHODS: The colon cancer LS 174T cell line was cultured and treated with zebularine and TSA. To determine cell viability, apoptosis, and the relative expression level of the genes, MTT assay, cell apoptosis assay, and qRT-PCR were done respectively.
RESULTS: Both compounds significantly inhibited cell growth, and induced apoptosis. Furthermore, both compounds increased p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 significantly. Additionally, zebularine and TSA decreased DNMTs and HDACs gene expression respectively.
CONCLUSION: The zebularine and trichostatin A can reactivate the CIP/KIP family through inhibition of DNMTs and HDACs genes activity.

Entities:  

Keywords:  CIP/KIP family; Colon cancer; Zebularine; trichostatin

Mesh:

Substances:

Year:  2020        PMID: 32711442      PMCID: PMC7573409          DOI: 10.31557/APJCP.2020.21.7.2131

Source DB:  PubMed          Journal:  Asian Pac J Cancer Prev        ISSN: 1513-7368


Introduction

A pattern of epigenetic modifications and changes, DNA methylation and histone modification, is central to many human cancers. Posttranslational modifications affect chromatin structure and compaction resulting in changes in cell behavior and altered gene expression. Aberrant altered epigenomic patterns and gene expression are significant features of many cancers. Epigenetic modifications comprising DNA methylation, histone methylation, and histone acetylation plays an important role in the induction and progression of numerous cancers (Ellis et al., 2009). In fact, dysregulated epigenetic modifications play a significant role in driving cancer development and progression. A variety of tumor suppressor genes (TSGs) have been demonstrated to be silenced in several cancers. Indeed, the TSGs silencing is accompanied by histone deacetylation and DNA hypermethylation (Bachman et al., 2003). The mammalian somatic cell cycle is an ordered, tightly-regulated process with multiple checkpoints. The cycle is divided into four phases comprising initial growth (G1), DNA synthesis (S), a gap (G2), and mitosis (M). The molecular machinery of the cell cycle is a family of enzymes, the cyclin-dependent kinases (Cdks). The active form of these enzymes is a complex consisting of a kinase and a cyclin. Both cyclin and Cdk are positive regulators of cell cycle progression whereas, cyclin-dependent kinase inhibitors (CKIs) are negative regulators of cell cycle which stop or break the cycle. These negative inhibitors comprise two families including INK and CIP/KIP families. The INK family consists of INK4A (p16), INK4B (p15), INK4C (p18), and INK4D (p19). The CIP/KIP family includes CIP1 (p21), KIP1 (p27), and KIP2 (p57) (Park et al., 2003). Recent in vitro studies have shown that two known mechanisms of epigenetic alteration consisting, methylation and histone deacetylation seem to be the best candidate mechanisms for inactivation of CIP/KIP family in numerous cancers such as gastric cancer (Shin et al., 2000; Borges et al., 2010), lung cancer (Fang et al., 2002), hepatocellular carcinoma (HCC), pancreatic cancers, and acute myeloid leukemia (Kikuchi et al., 2002), and colon cancer (Colo-320 and SW1116) (Fang et al., 2004). There are several reports regarding the association between overexpression of DNA methyltransferases 1, 2 and 3 and DNA methylation in various cancers comprising gastric cancer (Ding et al., 2008), colon cancer HCT116, LS180, HT29/219, Caco2, and SW742 cell lines (Sarabi et al., 2015). Furthermore, the overexpression of class I and II HDAC has been reported in colon cancer (Mariadason., 2008). Silenced TSGs are obvious targets for reactivation by DNA methyltransferase inhibitors (DNMTIs) such as 5-aza-2′-deoxycytidine (5-Aza-CdR), 5-azacytidine (5-Aza-CR) and zebularine. Numerous investigations have indicated that zebularine, a general inhibitor of DNA methylation, inhibits DNMTs in human breast cancer MDA-MB-231 and MCF-7 (Billam et al., 2010), T24 bladder carcinoma (Ben-Kasus et al., 2005), colon cancer SW480 cells, HT29, SW48 and HCT116 (Ikehata et al., 2014). Besides, it has been identified that histone deacetylase inhibitors (HDACIs) can suppress class I and II HDAC in colon cancer (Mariadason., 2008). Previously, we evaluated the effect of trichostatin A (TSA) on HCC (Sanaei et al., 2017; Sanaei et al., 2018; Leu et al., 2003) and also the effect of DNA demethylating agent 5-AZA-CdR on this cancer (Sanaei et al., 2019). The present study was designed to investigate the effect of zebularine and trichostatin A on p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a and DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene expression, cell growth inhibition and apoptosis induction in colon cancer LS 174T cell line.

Materials and Methods

Materials The human colon cancer LS 174T cell line was kindly provided from the National Cell Bank of Iran-Pasteur Institute and maintained in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with antibiotics and fetal bovine serum 10% in a humidified atmosphere of 5% CO2 in air at 37oC. All reagents (zebularine and TSA), kits, and instruments used in RNA extraction, reverse transcription, and real-time PCR were provided as obtained previously (Sanaei M et al., 2017; Sanaei M et al., 2018; Sanaei M et al., 2019). Cell culture and cell viability The colon cancer LS 174T cell viability was measured using 3 (4,5 dimethyl 2 thiazolyl) 2, 5 diphenyl 2H tetrazolium bromide (MTT) assay. The LS 174T cells were cultured and seeded in 96-well plates at a density of 4 × 105 cells per well and treated with zebularine (0, 10, 25, 50, 100, and 200 μM) and TSA (0, 1, 5, 10, 25, and 50 μM) for 24 and 48 h. The control groups were treated with Dimethyl sulfoxide (DMSO), 0.05 %, only. After incubation for 24 and 48 h, the LS 174T cells were exposed to MTT, MTT (0.5 mg/mL) was added to each well for 4 h. Finally, the MTT metabolite, the blue MTT formazan, was dissolved in DMSO (200 mL) and the optical density was detected by a microplate reader at a wavelength of 570 nM. Each experiment was repeated three times (triplicates). Cell apoptosis assay To determine the apoptotic LS 174T cells, the cells were treated with cultured and seeded at a density of 4 × 105 cells/well and treated with zebularine (50 μM) and TSA (5 μM) for 24 and 48 h. Following treatment, the cells were harvested by trypsin and washed twice with PBS and then resuspended in Binding buffer (1x). Subsequently, the cells were stained with annexin V-FITC (5 μl) and propidium iodide (5 μl) in the dark at room temperature for 15 min. Finally, the LS 174T apoptotic cells were counted by FACScan flow cytometry (Becton Dickinson, Heidelberg, Germany). Real-time Quantitative Reverse Transcription PolymeraseChain Reaction (qRT-PCR) The qRT-PCR was performed to determine the relative expression level of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) genes. The colon cancer LS 174T cells were cultured at a density of 4 × 105 cells/well and treated with zebularine (50 μM) and TSA (5 μM), as alone and combined, for 24 and 48 h, based on IC5o values. After 24 and 48 h of incubation, the total RNA was harvested using the RNeasy kit (Qiagen, Valencia, CA) according to the manufacturer protocol and treated by RNasefree DNase (Qiagen). The RNA was transcribed to complementary DNA (cDNA). QRT-PCR was done to assess the expression level of the mentioned genes as described previously (Sanaei et al., 2019). The program for the PCR was as we reported previously (Sanaei et al., 2019). The primer sequences of the genes are indicated in table1. GAPDH was used as an endogenous control. Data were analyzed using the comparative Ct (ΔΔct) method.
Table 1

The Primer Sequences of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6)

Primer NamePrimer Sequences (5' to 3')References
DNMT1 ForwardGAG GAA GCT GCT AAG GAC TAG TTCSanaei et al., 2018
DNMT1 ReverseACT CCA CAA TTT GAT CAC TAA ATCSanaei et al., 2018
DNMT3a ForwardGGA GGC TGA GAA GAA AGC CAA GGTSanaei et al., 2018
DNMT3a ReverseTTT GCC GTC TCC GAA CCA CAT GACSanaei et al., 2018
P21 ForwardAGG CGC CAT GTC AGA ACC GGC TGGSanaei et al., 2019
P21 ReverseGGA AGG TAG AGC TTG GGC AGG C Sanaei et al., 2019
P 27 ForwardATG TCA AAC GTG CGA GTG TCT AACSanaei et al., 2019
P 27 ReverseTTA CGT TTG ACG TCT TCT GAG GCC ASanaei et al., 2019
P 57 ForwardGCGGCGATCAAGAAGCTGTCSanaei et al., 2019
P 57 ReverseCCGGTTGCTGCTACATGAACSanaei et al., 2019
DNMT3b ForwardTAC ACA GAC GTG TCC AAC ATG GGCLeu et al., 2003
DNMT3b ReverseGGA TGC CTT CAG GAA TCA CAC CTCLeu et al., 2003
GAPDH ForwardTCCCATCACCATCTTCCAJin et al., 2008
GAPDH ReverseCATCACGCCACAGTTTCCJin et al., 2008
HDAC1 ForwardGACACGCCAAGTGTGTGGAASong et al., 2015
HDAC1 ReverseCCTCCCAGCATCAGCATAGGSong et al., 2015
HDAC2 ForwardACATGAGCAATGCGGAGAAATSong et al., 2015
HDAC2 ReverseTCTGCCATCTTGTGGTACAGTGASong et al., 2015
HDAC3 ForwardCCTTTTCCAGCCGGTTATCASong et al., 2015
HDAC3 ReverseACAATGCACGTGGGTTGGTSong et al., 2015
HDAC4 ForwardTCAGATCGCCAACACATTCGSong et al., 2015
HDAC4 ReverseACGGGAGCGGTTCTGTTAGASong et al., 2015
HDAC5 ForwardCCATTGGAGACGTGGAGTACCTSong et al., 2015
HDAC5 ReverseGCGGAGACTAGGACCACATCASong et al., 2015
HDAC6 ForwardTCGCTGCGTGTCCTTTCAGSong et al., 2015
HDAC6 ReverseGCTGTGAACCAACATCAGCTCTTSong et al., 2015

Results

Result of cell viability by the MTT assay To test the effect of zebularine (0, 10, 25, 50, 100, and 200 μM) and TSA (0, 1, 5, 10, 25, and 50 μM) on the colon cancer LS 174T cell viability, MTT assay was utilized. Our findings showed that the rate of cell growth inhibition was significantly increased in than that in control groups after 24 and 48 h. Results showed that the number of viable LS 174T cells decreased significantly, as the concentration of the compounds and duration increased; indicating a dose- and duration-dependent relationship (P< 0.001), Figure 1. The IC50 values were determined with approximately 50 and 5 μM for zebularine and TSA respectively.
Figure 1

In Vitro Effects of Zebularine (0, 10, 25, 50, 100, and 200 μM) and TSA (0, 1, 5, 10, 25, and 50 μM) on LS 174T Cells Viability Determined by MTT Assay at 24 and 48 h. As shown, from right to the left, the first column of each group belongs to the control group. Values are means of three experiments in triplicate. Asterisks (*) demonstrate significant differences between treated and untreated control groups

Result of cell apoptosis assay Flow cytometric analysis was achieved to determine whether zebularine (50 μM) and TSA (5 μM) can induce apoptosis in colon cancer LS 174T line. The percentage of treated and un-treated LS 174T apoptotic cells was evaluated by staining with annexin V-FITC and PI after 24 and 48 h of treatment. After treatment with zebularine and TSA, as alone and combined, the apoptosis percentage increased significantly as shown in Table 2 and Figures 2-4. Both compounds had a time-dependent manner. The apoptotic effect of TSA was stronger than that of zebularine. Further, maximum apoptosis was seen in the groups treated with combined agents, Figure 5.
Table 2

Percentage of Apoptosis in the Groups Treated with Zebularine and TSA, as Alone and Combined, at Different Periods

DrugDose/ μMDuration/ hApoptosis %P-value
Zebularine50248.07P < 0.001
504810.07P < 0.001
TSA52410.35P < 0.001
54813.8P < 0.001
Zebularine/TSA50/52485.11P < 0.001
50/54897.43P < 0.001
Figure 2

The Apoptotic Effect of Zebularine (50 μM) on Colon Cancer LS 174T Line Cell versus Control Groups at Different Periods (24 and 48h). The cells were treated with this zebularine for 24 and 48h and then the apoptotic effect was evaluated by flow cytometric analysis. Results were obtained from three independent experiments and were expressed as mean ± standard error of the mean

Figure 4

The Apoptotic Effect of Zebularine (50 μM) in Combination with TSA (5 μM) on LS 180 Cell versus Control Groups at Different Periods (24 and 48h). The cells were treated with combined agents for 24 and 48h and then the apoptotic effect was evaluated by flow cytometric analysis. Results were obtained from three independent experiments and were expressed as mean ± standard error of the mean

Figure 5.

The Comparative Apoptotic Effects of Zebularine (50 μM) in Comparison to and in Combination with TSA (5 μM) on LS 174T Cells. Asterisks (*) indicate significant differences between the treated and untreated control groups. As demonstrated above, TSA had a more significant apoptotic effect on LS 174T cells in comparison to zebularine. The combined treatment had a maximum effect on apoptosis

Result of determination of genes expression The effect of zebularine (50 μM) and TSA (5 μM) on the p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene expression was investigated by quantitative real-time RT-PCR analysis. The result indicated that treatment of LS 174T cells with zebularine (50 μM) and TSA (5 μM) for 24 and 48 h reactivated the p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 gene, down-regulated DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene expression. The CIP/KIP family (p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2) genes were more sensitive to TSA compared with zebularine. It means that TSA had a more significant effect on the up-regulation of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, Figures 6-9.
Figure 6

The Relative Expression Level of DNA Methyltransferases (DNMT1, 3a, and 3b), p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 in the LS 174T Cell Line Treated with Zebularine (50 μM) versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with zebularine. Asterisks (*) indicate significant differences between the treated and untreated groups

Figure 9

The Relative Expression Level of p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 in the LS 174T Cell Line Treated with Zebularine (50 μM) and TSA (5 μM), Individually and Combined, versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with the zebularine and TSA. Asterisks (*) indicate significant differences between the treated and untreated groups

Discussion

The mammalian cell cycle is regulated via interactions between cyclins and a family of negative cell cycle regulators classified into two families, the CIP/KIP family, and the INK4 family. DNA methylation patterns and histone deacetylation of these families strongly correlate with tumorigenesis (Tsou et al., 2002). DNA methylation is catalyzed by DNMT1, DNMT3a, and DNMT3b. Furthermore, histone deacetylation is catalyzed by HDACs. Therefore, DNMTs and HDACs induce hypermethylation and histone deacetylation respectively resulting in TSGs transcriptional repression and cancer induction (Li et al., 2007). The DNMTIs and HDACIs can reactivate epigenetically silenced TSGs (Yan et al., 2015). In the present study, zebularine and TSA reactivated the p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 gene, down-regulated DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene resulting in cell growth inhibition and apoptosis induction. The CIP/KIP family (p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2) gene was more sensitive to TSA compared with zebularine. It means that TSA had a more significant effect on the up-regulation of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2. In consistent with our result, it has been reported that zebularine can restore p21Cip1/Waf1/Sdi1 in colon cancer SW48 and HT-29 (Flis et al., 2014), CT15 and HT-29 colon cancer (Cheng et al., 2004). The other members of the DNMTI family act by the same pathway as reported for 5-azacitidine. It reactivates p21Cip1/Waf1/Sdi1in HCT 116 colon cancer cells (Jiemjit et al., 2008), p27Kip1 in colon cancer SW1116 cells (Lu et al., 2007), Caco2, RKO, SW48, SW480, Colo201, Colo205, Colo320, BM314, DLD-1, and HT29 (Kikuchi et al 2002). Further, we evaluated the molecular mechanism through which zebularine reactivate p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 gene and found that this agent targets some of DNMTIs (DNMT1, DNMT3a, and DNMT3b). A similar mechanism (DNMT inhibition) has been demonstrated in colon cancer HCT116 cells (Yang et al., 2013), HCC Hep G2 (Nakamura et al., 2013), cholangiocarcinoma cell lines TFK-1 and HuCCT1 (Nakamura et al., 2015). After assessment of the effect of TSA on p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 gene expression, we further determined the effect of TSA on Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) gene expression. As we reported, this agent down-regulated both Class I and II HDACs. Similarly, it has been shown that TSA down-regulates class I and II HDACs in colon cancer cells SW620, SW480, and DLD1 (Krishnan et al., 2010), class I and II HDACs in human prostate cancer LNCaP cells (Thakur et al., 2011). Further molecular mechanisms of TSA including down-regulation of HDAC8 in colon cancer cell line SW620 (Hu et al., 2003), HDACs 5 and 8 in lung cancer, breast cancer, and skin cancer cells (Chang et al., 2012). As mentioned above, we only evaluated the effect of TSA on Class I and II HDACs in colon cancer. Therefore, the investigation of TSA on the other classes of HDACs is recommended. In summary, our findings indicated that zebularine and TSA can down-regulate DNMT1, DNMT3a, DNMT3b, class I HDACs (HDACs 1, 2, 3) and class II HDACs (HDACs 4, 5, 6) resulting in reactivation of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, cell growth inhibition and apoptosis induction of colon cancer LS 174T cell line. The Primer Sequences of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2, DNMT1, DNMT3a, DNMT3b, Class I HDACs (HDACs 1, 2, 3) and Class II HDACs (HDACs 4, 5, 6) Percentage of Apoptosis in the Groups Treated with Zebularine and TSA, as Alone and Combined, at Different Periods The Relative Expression Level of DNMTs (DNMT1, DNMT3a, and DNMT3b), CIP/KIP Family (p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2) HDAC1, HDAC2, and HDAC3 Genes In Vitro Effects of Zebularine (0, 10, 25, 50, 100, and 200 μM) and TSA (0, 1, 5, 10, 25, and 50 μM) on LS 174T Cells Viability Determined by MTT Assay at 24 and 48 h. As shown, from right to the left, the first column of each group belongs to the control group. Values are means of three experiments in triplicate. Asterisks (*) demonstrate significant differences between treated and untreated control groups The Apoptotic Effect of Zebularine (50 μM) on Colon Cancer LS 174T Line Cell versus Control Groups at Different Periods (24 and 48h). The cells were treated with this zebularine for 24 and 48h and then the apoptotic effect was evaluated by flow cytometric analysis. Results were obtained from three independent experiments and were expressed as mean ± standard error of the mean The Apoptotic Effect of TSA (5 μM) on Colon Cancer LS 174T Line Cell versus Control Groups at Different Periods (24 and 48h). The cells were treated with this zebularine for 24 and 48h and then the apoptotic effect was evaluated by flow cytometric analysis. Results were obtained from three independent experiments and were expressed as mean ± standard error of the mean The Apoptotic Effect of Zebularine (50 μM) in Combination with TSA (5 μM) on LS 180 Cell versus Control Groups at Different Periods (24 and 48h). The cells were treated with combined agents for 24 and 48h and then the apoptotic effect was evaluated by flow cytometric analysis. Results were obtained from three independent experiments and were expressed as mean ± standard error of the mean The Relative Expression Level of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 Genes in the Groups Treated with Combined Treatment The Comparative Apoptotic Effects of Zebularine (50 μM) in Comparison to and in Combination with TSA (5 μM) on LS 174T Cells. Asterisks (*) indicate significant differences between the treated and untreated control groups. As demonstrated above, TSA had a more significant apoptotic effect on LS 174T cells in comparison to zebularine. The combined treatment had a maximum effect on apoptosis The Relative Expression Level of DNA Methyltransferases (DNMT1, 3a, and 3b), p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 in the LS 174T Cell Line Treated with Zebularine (50 μM) versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with zebularine. Asterisks (*) indicate significant differences between the treated and untreated groups The Relative Expression Level of Class I HDACs (HDACs 1, 2, 3), Class II HDACs (HDACs 4, 5, 6), p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 Gene in the LS 174T Cell Line Treated with TSA (5 μM) versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with TSA. Asterisks (*) indicate significant differences between the treated and untreated groups The Relative Expression Level of p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 in the LS 174T Cell Line Treated with Zebularine (50 μM) in Combination with TSA (5 μM) versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with the combined components. Asterisks (*) indicate significant differences between the treated and untreated groups The Relative Expression Level of p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2 in the LS 174T Cell Line Treated with Zebularine (50 μM) and TSA (5 μM), Individually and Combined, versus Untreated Control Groups at Different Periods (24 and 48h). The first column of each group belongs to the untreated control group and the others belong to the treated cells with the zebularine and TSA. Asterisks (*) indicate significant differences between the treated and untreated groups
Table 3

The Relative Expression Level of DNMTs (DNMT1, DNMT3a, and DNMT3b), CIP/KIP Family (p21Cip1/Waf1/Sdi1, p27Kip1, and p57Kip2) HDAC1, HDAC2, and HDAC3 Genes

Cell lineGeneDrugDose (μM) Duration (h)Expression P-value
LS 174T DNMT1 Zebularine50240.70.023
LS 174T DNMT1 Zebularine50480.550.001
LS 174T DNMT3a Zebularine50240.680.014
LS 174T DNMT3a Zebularine50480.50.001
LS 174T DNMT3b Zebularine50240.670.011
LS 174T DNMT3b Zebularine50480.440.01
LS 174T P21 Zebularine50241.70.004
LS 174T P21 Zebularine50481.90.001
LS 174T P27 Zebularine50241.80.001
LS 174T P27 Zebularine50482.10.001
LS 174T P57 Zebularine50241.60.001
LS 174T P57 Zebularine504820.001
LS 174T HDAC1 Trichostatin A5 μM240.580.001
LS 174T HDAC1 Trichostatin A5 μM480.40.001
LS 174T HDAC2 Trichostatin A5 μM240.560.002
LS 174T HDAC2 Trichostatin A5 μM480.380.001
LS 174T HDAC3 Trichostatin A5 μM240.570.001
LS 174T HDAC3 Trichostatin A5 μM480.370.001
LS 174T P21 Trichostatin A5 μM242.20.001
LS 174T P21 Trichostatin A5 μM482.80.001
LS 174T P27 Trichostatin A5 μM2420.001
LS 174T P27 Trichostatin A5 μM482.40.001
LS 174T P57 Trichostatin A5 μM242.30.001
LS 174T P57 Trichostatin A5 μM482.70.001
Table 4

The Relative Expression Level of p21Cip1/Waf1/Sdi1, p27Kip1, p57Kip2 Genes in the Groups Treated with Combined Treatment

Cell lineGeneDrugDose (μM) Duration (h)Expression P-value
LS 180 P21 Zebularine/TSA25/5 μM243.20.001
LS 180 P21 Zebularine/TSA25/5 μM483.50.001
LS 180 P27 Zebularine/TSA25/5 μM243.60.001
LS 180 P27 Zebularine/TSA25/5 μM483.90.001
LS 180 P57 Zebularine/TSA25/5 μM243.70.001
LS 180 P57 Zebularine/TSA25/5 μM483.80.001
  33 in total

1.  Mechanism for inactivation of the KIP family cyclin-dependent kinase inhibitor genes in gastric cancer cells.

Authors:  J Y Shin; H S Kim; J Park; J B Park; J Y Lee
Journal:  Cancer Res       Date:  2000-01-15       Impact factor: 12.701

2.  Double RNA interference of DNMT3b and DNMT1 enhances DNA demethylation and gene reactivation.

Authors:  Yu-Wei Leu; Farahnaz Rahmatpanah; Huidong Shi; Susan H Wei; Joseph C Liu; Pearlly S Yan; Tim Hui-Ming Huang
Journal:  Cancer Res       Date:  2003-10-01       Impact factor: 12.701

3.  Green tea polyphenols causes cell cycle arrest and apoptosis in prostate cancer cells by suppressing class I histone deacetylases.

Authors:  Vijay S Thakur; Karishma Gupta; Sanjay Gupta
Journal:  Carcinogenesis       Date:  2011-11-23       Impact factor: 4.944

4.  HDAC inhibitors regulate claudin-1 expression in colon cancer cells through modulation of mRNA stability.

Authors:  M Krishnan; A B Singh; J J Smith; A Sharma; X Chen; S Eschrich; T J Yeatman; R D Beauchamp; P Dhawan
Journal:  Oncogene       Date:  2009-11-02       Impact factor: 9.867

5.  Histone modifications and silencing prior to DNA methylation of a tumor suppressor gene.

Authors:  Kurtis E Bachman; Ben Ho Park; Ina Rhee; Harith Rajagopalan; James G Herman; Stephen B Baylin; Kenneth W Kinzler; Bert Vogelstein
Journal:  Cancer Cell       Date:  2003-01       Impact factor: 31.743

Review 6.  Cell cycle and cancer.

Authors:  Moon-Taek Park; Su-Jae Lee
Journal:  J Biochem Mol Biol       Date:  2003-01-31

Review 7.  Epigenetics in cancer: targeting chromatin modifications.

Authors:  Leigh Ellis; Peter W Atadja; Ricky W Johnstone
Journal:  Mol Cancer Ther       Date:  2009-06-09       Impact factor: 6.261

8.  p21(WAF1/CIP1) induction by 5-azacytosine nucleosides requires DNA damage.

Authors:  A Jiemjit; T E Fandy; H Carraway; K A Bailey; S Baylin; J G Herman; S D Gore
Journal:  Oncogene       Date:  2008-01-28       Impact factor: 9.867

9.  Genistein and Trichostatin A Induction of Estrogen Receptor Alpha Gene Expression, Apoptosis and Cell Growth Inhibition in Hepatocellular Carcinoma HepG 2 Cells

Authors:  Masumeh Sanaei; Fraidoon Kavoosi; Habibeh Salehi
Journal:  Asian Pac J Cancer Prev       Date:  2017-12-29

10.  DNA methyltransferase inhibitor zebularine inhibits human hepatic carcinoma cells proliferation and induces apoptosis.

Authors:  Kazuaki Nakamura; Kazuko Aizawa; Kazuhiko Nakabayashi; Natsuko Kato; Junji Yamauchi; Kenichiro Hata; Akito Tanoue
Journal:  PLoS One       Date:  2013-01-08       Impact factor: 3.240

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  6 in total

1.  Trichostatin A enhances radiosensitivity and radiation-induced DNA damage of esophageal cancer cells.

Authors:  Shaobo Wang; Min Song; Bo Zhang
Journal:  J Gastrointest Oncol       Date:  2021-10

Review 2.  Hepigenetics: A Review of Epigenetic Modulators and Potential Therapies in Hepatocellular Carcinoma.

Authors:  Mohamed H Yousef; Hassan A N El-Fawal; Anwar Abdelnaser
Journal:  Biomed Res Int       Date:  2020-11-24       Impact factor: 3.411

3.  Histone Deacetylase Inhibitors, Intrinsic and Extrinsic Apoptotic Pathways, and Epigenetic Alterations of Histone Deacetylases (HDACs) in Hepatocellular Carcinoma.

Authors:  Masumeh Sanaei; Fraidoon Kavoosi
Journal:  Iran J Pharm Res       Date:  2021       Impact factor: 1.696

4.  Effect of Zebularine in Comparison to Trichostatin A on the Intrinsic and Extrinsic Apoptotic Pathway, Cell Viability, and Apoptosis in Hepatocellular Carcinoma SK-Hep 1, Human Colorectal Cancer SW620, and Human Pancreatic Cancer PaCa-44 Cell Lines.

Authors:  Masumeh Sanaei; Fraidoon Kavoosi
Journal:  Iran J Pharm Res       Date:  2021       Impact factor: 1.696

5.  Effect of vorinostat on INK4 family and HDACs 1, 2, and 3 in pancreatic cancer and hepatocellular carcinoma.

Authors:  Masumeh Sanaei; Fraidoon Kavoosi
Journal:  Res Pharm Sci       Date:  2021-05-12

6.  Effect of Decitabine (5-aza-2'-deoxycytidine, 5-aza-CdR) in Comparison with Vorinostat (Suberoylanilide Hydroxamic Acid, SAHA) on DNMT1, DNMT3a and DNMT3b, HDAC 1-3, SOCS 1, SOCS 3, JAK2, and STAT3 Gene Expression in Hepatocellular Carcinoma HLE and LCL-PI 11 Cell Lines.

Authors:  Masumeh Sanaei; Fraidoon Kavoosi; Mohammad Pourahmadi
Journal:  Asian Pac J Cancer Prev       Date:  2021-07-01
  6 in total

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