| Literature DB >> 32711437 |
Tahsin Nairuz1, Mostafijur Rahman2, Most Umme Bushra3, Yearul Kabir2.
Abstract
BACKGROUND: Tumor suppressor gene (TP53) is considered as the most frequently mutated gene in almost all forms of human cancer. Moreover, genetic variations in the XPD gene affect the DNA repair capacity increasing cancer susceptibility. Polymorphisms within these genes can play a major role in determining individual lung cancer susceptibility. However, several studies have investigated this possibility; but reported conflicting results. Therefore, the objective of this study was to investigate the role of TP53 Arg72Pro and XPD Lys751Gln gene polymorphisms on lung cancer susceptibility in the Bangladeshi population.Entities:
Keywords: Genetic polymorphism; Lung cancer; PCR-RFLP; Tp53; XPD
Mesh:
Substances:
Year: 2020 PMID: 32711437 PMCID: PMC7573406 DOI: 10.31557/APJCP.2020.21.7.2091
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Figure 1Multiplex-PCR Analysis of Arginine Specific Exon of TP53 Gene Polymorphism. Arginine specific exon of TP53 (199bp), internal control β-globin (268bp). Lane 1-7,9,11,12,14 indicates the presence of arginine specific exon of the TP53 gene. Lane 10,13 represents individuals who are negative for this specific exon of the TP53 gene. Lane 8 indicates the molecular marker of the 100 bp ladder
Figure 2Multiplex-PCR Analysis of Proline Specific Exon of TP53 Gene Polymorphism. Proline specific exon of TP53 (177bp), internal control β-globin (268bp). Lane 1-3,6,9 indicates the presence of proline specific exon of the TP53 gene. Lane 5,7,8 represents individuals who are negative for this specific exon of the TP53 gene. Lane 4 indicates the molecular marker of the 100 bp ladder
Figure 3Representative PCR Products of the XPD Gene in 2% Agarose Gel
Figure 4.Representative Picture of Digestion of XPD by PstI in 3% Agarose Gel
Baseline Characteristics of the Study Subject
| Variable | Control (n=200) | Patient (n=180) |
|
|---|---|---|---|
| Age (Years) | |||
| <50 | 66 (33.00) | 43 (23.88) | |
| 50-70 | 129 (64.50) | 126 (70.00) | |
| >70 | 5 (2.50) | 11 (6.11) | |
| Age (Mean±SEM) | 54.70±0.55 | 55.83±0.66 | ns |
| Gender | |||
| Male | 155 (77.50) | 109 (60.56) | |
| Female | 45 (22.50) | 71 (39.44) | <0.001 |
| Smoking status | |||
| Never | 125 (62.50) | 52 (28.89) | |
| Ever | 75 (37.50) | 128 (71.11) | <0.001 |
| Family history of cancer | |||
| Yes | 28 (14.00) | 85 (47.22) | |
| No | 172 (86.00) | 95 (52.78) | <0.001 |
Fisher’s and chi-square tests were done to calculate the statistical significance; p<0.05 considered as a level of significance; ns, not significant
Genotypic Distribution of TP53 (codon 72) and XPD (codon 751) in the Study Subject and Risk of Lung Cancer
| Gene | Genotype | Control (n=200) | Patient (n= 180) | OR (95% CI) |
|
|---|---|---|---|---|---|
|
| Arg/Arg | 74 (37.00) | 66 (36.67) | 1.0 (Ref.) | |
| Arg/Pro | 116 (58.00) | 101 (56.11) | 0.976 (0.64-1.50) | 0.914 | |
| Pro/ Pro | 10 (5.00) | 13 (7.22) | 1.458 (0.60-3.55) | 0.501 | |
|
| Lys/Lys | 103 (51.50) | 80 (44.44) | 1.0 (Ref.) | |
| Lys/Gln | 88 (44.00) | 75 (41.67) | 1.097 (0.72-1.68) | 0.745 | |
| Gln/Gln | 9 (4.50) | 25 (13.89) | 3.576 (1.58-8.09) | 0.002* |
Odds ratios (OR) and 95% confidence interval (95%CI); *p<0.05 considered as level of significance.
TP53 and XPD Genotype on Risk of Lung Cancer According to Smoking Status and Family History of Cancer
| Smoking Status/ Family History of Cancer | Gene | Genotype | Control | Patient | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| Arg/Arg | 28 | 50 | 1.0 (Ref.) | - | ||
| Smoker | Arg/Pro | 41 | 69 | 0.94 (0.52-1.72) | ns | |
| Pro/ Pro | 6 | 9 | 0.84 (0.27-2.61) | ns | ||
|
| ||||||
| Arg/Arg | 46 | 16 | 1.0 (Ref.) | - | ||
| Non Smoker | Arg/Pro | 75 | 32 | 1.23 (0.61-2.48) | ns | |
| Pro/ Pro | 4 | 4 | 2.88 (0.64-12.87) | ns | ||
| Lys/Lys | 39 | 58 | 1.0 (Ref) | - | ||
| Smoker | Lys/Gln | 33 | 52 | 1.06 (0.58-1.92) | ns | |
| Gln/Gln | 3 | 18 | 4.03 (1.11-14.63) | 0.026* | ||
|
| Lys/Lys | 64 | 22 | 1.0 (Ref) | - | |
| Lys/Gln | 55 | 23 | 1.22 (0.61-2.42) | ns | ||
| Non Smoker | Gln/Gln | 6 | 7 | 3.39 (1.03-11.19) | ns | |
| Arg/Arg | 17 | 28 | 1.0 (Ref.) | - | ||
| Yes | Arg/Pro | 9 | 51 | 3.44 (1.36-8.72) | 0.011* | |
| Pro/ Pro | 2 | 6 | 1.82 (0.33-10.07) | ns | ||
|
| ||||||
| No | Arg/Arg | 57 | 38 | 1.0 (Ref.) | - | |
| Arg/Pro | 107 | 50 | 0.70 (0.41-1.19) | ns | ||
| Pro/ Pro | 8 | 7 | 1.31 (0.44-3.92) | ns | ||
| Lys/Lys | 21 | 35 | 1.0 (Ref.) | - | ||
| Yes | Lys/Gln | 7 | 37 | 3.17 (1.20-8.39) | 0.024* | |
| Gln/Gln | 0 | 13 | 16.35 (0.92-289.5) | 0.007* | ||
|
| ||||||
| No | Lys/Lys | 82 | 45 | 1.0 (Ref.) | - | |
| Lys/Gln | 81 | 38 | 0.85 (0.50-1.45) | ns | ||
| Gln/Gln | 9 | 12 | 2.43 (0.95-6.21) | ns |
Odds ratios (OR) and 95% confidence interval (95%CI); *p<0.05 considered as level of significance; ns, not significant