| Literature DB >> 32709027 |
Carlos E Galván-Tejada1, Laura A Zanella-Calzada2, Karen E Villagrana-Bañuelos1, Arturo Moreno-Báez1, Huizilopoztli Luna-García1, Jose María Celaya-Padilla1, Jorge Issac Galván-Tejada1, Hamurabi Gamboa-Rosales1.
Abstract
The Word Health Organization (WHO) declared in March 2020 that we are facing a pandemic designated as COVID-19, which is the acronym of coronavirus disease 2019, caused by a new virus know as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In Mexico, the first cases of COVID-19, was reported by the Secretary of Health on 28 February 2020. More than sixteen thousand cases and more than fifteen thousand deaths have been reported in Mexico, and it continues to rise; therefore, this article proposes two online visualization tools (a web platform) that allow the analysis of demographic data and comorbidities of the Mexican population. The objective of these tools is to provide graphic information, fast and updated, based on dataset obtained directly from National Governments Health Secretary (Secretaría de Salud, SSA) which is daily refreshed with the information related to SARS-CoV-2. To allow a dynamical update and friendly interface, and approach with R-project, a well-known Open Source language and environment for statistical computing and Shiny package, were implemented. The dataset is loaded automatically from the latest version released by the federal government of Mexico. Users can choose to study particular groups determined by gender, entity, type of result (positive, negative, pending outcome) and comorbidity. The image results are plots that can be instantly interpreted and supported by the text summary. This tool, in addition to being a consultation for the general public, is useful in Public Health to facilitate the visualization of the data, allowing its timely interpretation due to the changing nature of COVID-19, it can even be used for decision-making by leaders, for the benefit of the health of the community.Entities:
Keywords: COVID-19; comorbidity analysis; demographic analysis; web interface development
Mesh:
Year: 2020 PMID: 32709027 PMCID: PMC7400260 DOI: 10.3390/ijerph17145173
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Figure 1Flowchart of the methodology proposed.
Table of the features included in the dataset.
| Feature | Description | Posible Values |
|---|---|---|
| Update Date | Dataset is complemented daily, this features allos the identification of the last refresh | Date format YYYY-MM-DD |
| Id | Identification of the case number | Numeric Integer |
| Origin | To comprise this data set is used a sentinel surveillance methodology of the system of respiratory disease | 1—RDMHU |
| Sector | Type of national system institution which give primary atention. | |
| Medical Unit | Id of the medical unit who give primary atention | |
| Sex | Patients sex | 1 Female |
| National entity | Patients birth entity | Numeric Integer of entity ID |
| Local entity | Patients residence entity | Numeric Integer of entity ID |
| Municipality | Patients residence minucipality | Numeric Integer of municipality ID |
| Patient Type | Type of care the patient received in the unit. It is called outpatient if returned home or inpatient if | 1—Outpatient |
| Entry date | Date of admission of the patient to the care unit. | Date format YYYY-MM-DD |
| Date of symptoms | Date the patient’s symptomatology began. | Date format YYYY-MM-DD |
| Date of death | Date the patient died. | Date format YYYY-MM-DD |
| Intubated | Patient required intubation. | Yes/No |
| Pneumonia | Patient was diagnosed with pneumonia. | Yes/No |
| Age | Age in years | Numeric Integer |
| Nationality | Identifies if the patient is Mexican or foreign. | 1—Mexican |
| Pregnancy | Identify if the patient is pregnant. | Yes/No |
| Speak Native language | Identify if the patient speaks indigenous language. | Yes/No |
| Diabetes | Diagnosis of diabetes. | Yes/No |
| COPD | Diagnosis of Chronic obstructive pulmonary disease. | Yes/No |
| Asthma | Diagnosis of Asthma | Yes/No |
| immunosuppressed | Patient has immunosuppression. | Yes/No |
| hypertension | Patient has hypertension | Yes/No |
| other comorbidity | Other diseases | Yes/No |
| Cardiovascular | Diagnosis of cardiovascular disease. | Yes/No |
| Obesity | Patient has obesity | Yes/No |
| Chronic kidney | Diagnosis of chronic renal failure. | Yes/No |
| Smoking | Patient has a smoking habit. | Yes/No |
| Other case | Patient had contact with another case diagnosed with SARS CoV-2 | Yes/No |
| Result | Identifies the sample analysis result reported by the National Network of Epidemiological Surveillance Laboratories. | 1 Positive SARS-CoV-2 |
| Migrant | Identify if the patient is a migrant. | Yes/No |
| Nationality | Identify the patients nationality. | Name of the Country |
| Country of origin | Country from which the patient left for Mexico. | Name of the Country |
| UCI | Identifies if the patient required admission to an Intensive Care Unit. | Yes/No |
Figure 2Layer of the web interface that allows to analyze the behavior of COVID-19 based on demographic information.
Figure 3Layer of the web interface that allows to analyze the behavior of COVID-19 based on comorbidity information.
Figure 4Histogram of the distribution by age the population from all the territory with positive SARS-CoV-2.
Figure 5Boxplot of the distribution by age the population from all the territory with positive SARS-CoV-2.
Figure 6Daily evolution plot of cases presented in the population from all the territory.
Figure 7Density plot of the population from all the territory with positive SARS-CoV-2.
Figure 8Weekly incidence plot of cases of SARS-CoV-2 in the population from all the territory.
Figure 9Double Age boxplot comparison of recovered cases against deaths.
Figure 10Comorbidity overlapped histogram of the population from all the territory with positive SARS-CoV-2.
Figure 11Double boxplot of the population from all the territory with positive SARS-CoV-2 with/without diabetes comorbidity.
Figure 12Comorbidity incidence of the population from all the territory with positive SARS-CoV-2.