Literature DB >> 3270542

The structure of poly(dA).poly(dT) as revealed by an X-ray fibre diffraction.

D G Alexeev1, A A Lipanov.   

Abstract

X-ray diffraction in fibres revealed that the calcium salt of poly(dA).poly(dT) is a 10-fold double helix with a pitch of 3.23 nm. The opposite sugar-phosphate chains in the refined model are characterized by a complete conformational equivalence and contain sugars in a conformation close to C2'-endo. As a result a new model of the sodium salt of poly(dA).poly(dT) has been constructed, which is different from the Heteronomous DNA proposed earlier (S. Arnott et al., Nucl. Acids Res. 11, 4141 (1983)). The new model of Na-poly(dA).poly(dT) has conformationally similar opposite chains; it is a structure of the B-type, rather like that of Ca-poly(dA).poly(dT).

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Year:  1987        PMID: 3270542     DOI: 10.1080/07391102.1987.10507693

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  8 in total

1.  3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

2.  Structural basis for DNA bending.

Authors:  J G Nadeau; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

3.  Calibration of DNA curvature and a unified description of sequence-directed bending.

Authors:  H S Koo; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

4.  Structure of an alternating-B DNA helix and its relationship to A-tract DNA.

Authors:  C Yoon; G G Privé; D S Goodsell; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

5.  Preparation, resonance assignment, and preliminary dynamics characterization of residue specific 13C/15N-labeled elongated DNA for the study of sequence-directed dynamics by NMR.

Authors:  Evgenia N Nikolova; Hashim M Al-Hashimi
Journal:  J Biomol NMR       Date:  2009-07-28       Impact factor: 2.835

6.  Stability of triple-helical poly(dT)-poly(dA)-poly(dT) DNA with counterions.

Authors:  V M Dadarlat; V K Saxena
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

7.  OR3 operator of bacteriophage lambda in a 23 base-pair DNA fragment: sequence-specific 1H NMR assignments for the non-labile protons and comparison with the isolated 17 base-pair operator.

Authors:  R Grütter; G Otting; K Wüthrich; W Leupin
Journal:  Eur Biophys J       Date:  1988       Impact factor: 1.733

8.  Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.

Authors:  Guohui Zheng; Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2009-05-27       Impact factor: 16.971

  8 in total

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