Literature DB >> 32701422

Six novel species of the obligate marine actinobacterium Salinispora, Salinispora cortesiana sp. nov., Salinispora fenicalii sp. nov., Salinispora goodfellowii sp. nov., Salinispora mooreana sp. nov., Salinispora oceanensis sp. nov. and Salinispora vitiensis sp. nov., and emended description of the genus Salinispora.

Brenda Román-Ponce1, Natalie Millán-Aguiñaga2, Dulce Guillen-Matus3, Alexander B Chase3, Joape G M Ginigini4, Katy Soapi4, Klaus D Feussner4, Paul R Jensen3, Martha E Trujillo1.   

Abstract

Ten representative actinobacterial strains isolated from marine sediments collected worldwide were studied to determine their taxonomic status. The strains were previously identified as members of the genus Salinispora and shared >99 % 16S rRNA gene sequence similarity to the three currently recognized Salinispora species. Comparative genomic analyses resulted in the delineation of six new species based on average nucleotide identity and digital DNA-DNA hybridization values below 95 and 70 %, respectively. The species status of the six new groups was supported by a core-genome phylogeny reconstructed from 2106 orthologs detected in 118 publicly available Salinispora genomes. Chemotaxonomic and physiological studies were used to complete the phenotypic characterization of the strains. The fatty acid profiles contained the major components iso-C16 : 0, C15 : 0, iso-17 : 0 and anteiso C17 : 0. Galactose and xylose were common in all whole-sugar patterns but differences were found between the six groups of strains. Polar lipid compositions were also unique for each species. Distinguishable physiological and biochemical characteristics were also recorded. The names proposed are Salinispora cortesiana sp. nov., CNY-202T (=DSM 108615T=CECT 9739T); Salinispora fenicalii sp. nov., CNT-569T (=DSM 108614T=CECT 9740T); Salinispora goodfellowii sp. nov., CNY-666T (=DSM 108616T=CECT 9738T); Salinispora mooreana sp. nov., CNT-150T (=DSM 45549T=CECT 9741T); Salinispora oceanensis sp. nov., CNT-138T (=DSM 45547T=CECT 9742T); and Salinispora vitiensis sp. nov., CNT-148T (=DSM 45548T=CECT 9743T).

Entities:  

Keywords:  Actinobacteria; Salinispora; obligate marine

Mesh:

Substances:

Year:  2020        PMID: 32701422      PMCID: PMC7660244          DOI: 10.1099/ijsem.0.004330

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  40 in total

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Authors:  Paul R Jensen; Erin Gontang; Chrisy Mafnas; Tracy J Mincer; William Fenical
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2.  Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora.

Authors:  Paul R Jensen; Philip G Williams; Dong-Chan Oh; Lisa Zeigler; William Fenical
Journal:  Appl Environ Microbiol       Date:  2006-12-08       Impact factor: 4.792

3.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

4.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

5.  Diversity and distribution of the bioactive actinobacterial genus Salinispora from sponges along the Great Barrier Reef.

Authors:  M E Vidgen; J N A Hooper; J A Fuerst
Journal:  Antonie Van Leeuwenhoek       Date:  2011-11-18       Impact factor: 2.271

6.  Micromonospora halotolerans sp. nov., isolated from the rhizosphere of a Pisum sativum plant.

Authors:  Lorena Carro; Rüdiger Pukall; Cathrin Spröer; Reiner M Kroppenstedt; Martha E Trujillo
Journal:  Antonie Van Leeuwenhoek       Date:  2013-03-15       Impact factor: 2.271

7.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
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8.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

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Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

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Authors:  Andrew J Page; Carla A Cummins; Martin Hunt; Vanessa K Wong; Sandra Reuter; Matthew T G Holden; Maria Fookes; Daniel Falush; Jacqueline A Keane; Julian Parkhill
Journal:  Bioinformatics       Date:  2015-07-20       Impact factor: 6.937

10.  Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations.

Authors:  Natalie Millán-Aguiñaga; Krystle L Chavarria; Juan A Ugalde; Anne-Catrin Letzel; Greg W Rouse; Paul R Jensen
Journal:  Sci Rep       Date:  2017-06-15       Impact factor: 4.379

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Review 2.  Structure and Candidate Biosynthetic Gene Cluster of a Manumycin-Type Metabolite from Salinispora pacifica.

Authors:  Gabriel Castro-Falcón; Kaitlin E Creamer; Alexander B Chase; Min Cheol Kim; Douglas Sweeney; Evgenia Glukhov; William Fenical; Paul R Jensen
Journal:  J Nat Prod       Date:  2022-03-09       Impact factor: 4.803

3.  Specialized Metabolite-Mediated Predation Defense in the Marine Actinobacterium Salinispora.

Authors:  Robert N Tuttle; Greg W Rouse; Gabriel Castro-Falcón; Chambers C Hughes; Paul R Jensen
Journal:  Appl Environ Microbiol       Date:  2021-10-20       Impact factor: 5.005

4.  Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity.

Authors:  Kaitlin E Creamer; Yuta Kudo; Bradley S Moore; Paul R Jensen
Journal:  Microb Genom       Date:  2021-05

Review 5.  Integrating perspectives in actinomycete research: an ActinoBase review of 2020-21.

Authors:  Agustina Undabarrena; Camila F Pereira; Worarat Kruasuwan; Jonathan Parra; Nelly Sélem-Mojica; Kristiina Vind; Jana K Schniete
Journal:  Microbiology (Reading)       Date:  2021-09       Impact factor: 2.777

6.  Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.

Authors:  Alexander B Chase; Douglas Sweeney; Mitchell N Muskat; Dulce G Guillén-Matus; Paul R Jensen
Journal:  mBio       Date:  2021-11-23       Impact factor: 7.867

7.  Rare actinobacteria isolated from the hypersaline Ojo de Liebre Lagoon as a source of novel bioactive compounds with biotechnological potential.

Authors:  Andrea Y Zamora-Quintero; Mónica Torres-Beltrán; Dulce G Guillén Matus; Irasema Oroz-Parra; Natalie Millán-Aguiñaga
Journal:  Microbiology (Reading)       Date:  2022-02       Impact factor: 2.777

8.  The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal).

Authors:  António Pinto-Almeida; Anelize Bauermeister; Luca Luppino; Inês R Grilo; Juliana Oliveira; Joana R Sousa; Daniel Petras; Clara F Rodrigues; Alejandra Prieto-Davó; Deniz Tasdemir; Rita G Sobral; Susana P Gaudêncio
Journal:  Mar Drugs       Date:  2021-12-23       Impact factor: 5.118

  8 in total

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