Literature DB >> 32697579

Continuum Electrostatic Behavior of a 3D-RISM Theory.

Benoît Roux1.   

Abstract

The electrostatic response underlying the 3D-RISM theory and its general relationship to models in which the solvent is represented in terms of a dielectric continuum are examined. It is found that the theory provides a coherent picture of solvation, although its behavior is not entirely consistent with the trends that are expected in the limit of a large solute. The electrostatic discrepancy is due to the nature of the isotropic pair additive site-site correlation function associated with the susceptibility response of the uniform fluid. The influence of the discrepancy in the magnitude of the solvation free energy is negligible for a solvent with a large dielectric constant.

Entities:  

Year:  2020        PMID: 32697579      PMCID: PMC7568820          DOI: 10.1021/acs.jpcb.0c05519

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

1.  An accurate prediction of hydration free energies by combination of molecular integral equations theory with structural descriptors.

Authors:  Ekaterina L Ratkova; Gennady N Chuev; Volodymyr P Sergiievskyi; Maxim V Fedorov
Journal:  J Phys Chem B       Date:  2010-09-23       Impact factor: 2.991

2.  An MM/3D-RISM approach for ligand binding affinities.

Authors:  Samuel Genheden; Tyler Luchko; Sergey Gusarov; Andriy Kovalenko; Ulf Ryde
Journal:  J Phys Chem B       Date:  2010-07-01       Impact factor: 2.991

3.  Density functional theory of solvation and its relation to implicit solvent models.

Authors:  Rosa Ramirez; Daniel Borgis
Journal:  J Phys Chem B       Date:  2005-04-14       Impact factor: 2.991

4.  Implicit solvent models.

Authors:  B Roux; T Simonson
Journal:  Biophys Chem       Date:  1999-04-05       Impact factor: 2.352

5.  Ligand mapping on protein surfaces by the 3D-RISM theory: toward computational fragment-based drug design.

Authors:  Takashi Imai; Koji Oda; Andriy Kovalenko; Fumio Hirata; Akinori Kidera
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

6.  Three-dimensional molecular theory of solvation coupled with molecular dynamics in Amber.

Authors:  Tyler Luchko; Sergey Gusarov; Daniel R Roe; Carlos Simmerling; David A Case; Jack Tuszynski; Andriy Kovalenko
Journal:  J Chem Theory Comput       Date:  2010-03-09       Impact factor: 6.006

7.  Integral equations in the study of polar and ionic interaction site fluids.

Authors:  Jesse J Howard; B Montgomery Pettitt
Journal:  J Stat Phys       Date:  2011-10-01       Impact factor: 1.548

8.  Charge Density of Cation Determines Inner versus Outer Shell Coordination to Phosphate in RNA.

Authors:  Hung T Nguyen; D Thirumalai
Journal:  J Phys Chem B       Date:  2020-05-11       Impact factor: 2.991

9.  New Protocol for Predicting the Ligand-Binding Site and Mode Based on the 3D-RISM/KH Theory.

Authors:  Masatake Sugita; Masataka Hamano; Kota Kasahara; Takeshi Kikuchi; Fumio Hirata
Journal:  J Chem Theory Comput       Date:  2020-03-27       Impact factor: 6.006

10.  The SAMPL6 challenge on predicting octanol-water partition coefficients from EC-RISM theory.

Authors:  Nicolas Tielker; Daniel Tomazic; Lukas Eberlein; Stefan Güssregen; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2020-01-24       Impact factor: 3.686

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