Literature DB >> 32697187

Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba.

Inseong Cha1, Heeyoung Kang1, Haneul Kim1, Seokhyeon Bae1, Kiseong Joh.   

Abstract

Strain HMF4947T, isolated from the bark of a ginkgo tree, was a pale-pink coloured, Gram-stain-negative, non-motile, strictly aerobic and rod-shaped bacterium. The isolate grew optimally on Reasoner's 2A agar at 30 °C, pH 7.0 and with 0 % NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain HMF4947T belonged to the genus Hymenobacter and was most closely related to Hymenobacter metalli A2-91T (96.9 % sequence similarity) and Hymenobacter pomorum 9-2-1-1T (96.5 %). The average nucleotide identity and estimated DNA-DNA hybridization values between strain HMF4947T and Hymenobacter arizonensis DSM 17870T were 74.3 and 20.5 %, respectively. The major fatty acids were summed feature 3 (C16 : 1  ω7c and/or C16 : 1  ω6c), iso-C15 : 0 and C16 : 1  ω5c. The predominant isoprenoid quinone was menaquinone-7. The polar lipids comprised phosphatidylethanolamine, one unidentified aminoglycolipid, three unidentified aminophospholipids, one unidentified phospholipid, three unidentified aminolipids, two unidentified glycolipids and three unidentified polar lipids. The genomic DNA G+C content was 59.3 mol%. Thus, based on phylogenetic, phenotypic and chemotaxonomic data, strain HMF4947T represents a novel species of the genus Hymenobacter, for which the name Hymenobacter ginkgonis sp. nov. is proposed. The type strain of the species is strain HMF4947T (=KCTC 72780T=NBRC 114271T).

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Keywords:  Hymenobacter ginkgonis; tree bark

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Year:  2020        PMID: 32697187     DOI: 10.1099/ijsem.0.004343

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Hymenobacter telluris sp. nov., isolated from soil in South Korea.

Authors:  Tuvshinzaya Damdintogtokh; Yuna Park; Soohyun Maeng; Hye Jin Oh; Minji Bang; Young Koung Lee; Jaesung Oh; Jaewoo Bai; Myung Kyum Kim
Journal:  Arch Microbiol       Date:  2022-01-04       Impact factor: 2.552

2.  Hymenobacter properus sp. nov., Hymenobacter ruricola sp. nov., and Hymenobacter jeongseonensis sp. nov., three new species isolated from mountain and beach soil in South Korea.

Authors:  Minji Bang; Sathiyaraj Srinivasan; Gayathri Sathiyaraj
Journal:  Antonie Van Leeuwenhoek       Date:  2021-05-27       Impact factor: 2.271

  2 in total

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