Literature DB >> 32696358

Production of Intrinsically Disordered Proteins for Biophysical Studies: Tips and Tricks.

Christian Parsbæk Pedersen1, Pernille Seiffert1, Inna Brakti1, Katrine Bugge2.   

Abstract

Intrinsically disordered proteins (IDPs) have no single, fixed tertiary structure, yet they take on many vital functions in biology. In recent years, considerable effort has been put into the structural characterization of their conformational ensembles, to understand the link between the transient, short- and long-range organizations of IDPs and their functions. Such biophysical studies require substantial amounts of pure protein, representing a major bottleneck in the studies of IDPs. However, the unique physicochemical properties resulting from their compositional bias may be exploited for simple yet effective purification strategies. In this chapter, we provide tips and tricks for IDP production and describe the most important analyses to carry out before bringing an IDP of interest to the laboratory. We outline four purification protocols utilizing the unique properties of IDPs as well as some commonly encountered challenges and pitfalls.

Entities:  

Keywords:  Heat treatment; IDP; Intrinsically disordered proteins; Ion-exchange chromatography; Isoelectric precipitation; Protein purification; Purification optimization; Reversed-phase chromatography; Troubleshooting

Mesh:

Substances:

Year:  2020        PMID: 32696358     DOI: 10.1007/978-1-0716-0524-0_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  29 in total

Review 1.  What does it mean to be natively unfolded?

Authors:  Vladimir N Uversky
Journal:  Eur J Biochem       Date:  2002-01

Review 2.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

3.  Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions.

Authors:  Peter Tompa; Monika Fuxreiter
Journal:  Trends Biochem Sci       Date:  2007-11-28       Impact factor: 13.807

Review 4.  Cell-free expression--making a mark.

Authors:  Frank Bernhard; Yuzuru Tozawa
Journal:  Curr Opin Struct Biol       Date:  2013-04-27       Impact factor: 6.809

Review 5.  Introducing protein intrinsic disorder.

Authors:  Johnny Habchi; Peter Tompa; Sonia Longhi; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-17       Impact factor: 60.622

Review 6.  Heterologous Protein Expression in Pichia pastoris: Latest Research Progress and Applications.

Authors:  Veeresh Juturu; Jin Chuan Wu
Journal:  Chembiochem       Date:  2017-12-13       Impact factor: 3.164

7.  IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions-Insights from transcription factors.

Authors:  Peter S Millard; Katrine Bugge; Riccardo Marabini; Wouter Boomsma; Meike Burow; Birthe B Kragelund
Journal:  Protein Sci       Date:  2019-11-11       Impact factor: 6.725

8.  Extreme disorder in an ultrahigh-affinity protein complex.

Authors:  Alessandro Borgia; Madeleine B Borgia; Katrine Bugge; Vera M Kissling; Pétur O Heidarsson; Catarina B Fernandes; Andrea Sottini; Andrea Soranno; Karin J Buholzer; Daniel Nettels; Birthe B Kragelund; Robert B Best; Benjamin Schuler
Journal:  Nature       Date:  2018-02-21       Impact factor: 49.962

9.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

Review 10.  NMR contributions to structural dynamics studies of intrinsically disordered proteins.

Authors:  Robert Konrat
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.