Literature DB >> 32691052

Epigenetic hallmarks of age-related macular degeneration are recapitulated in a photosensitive mouse model.

Jennings Luu1,2, Les Kallestad2, Thanh Hoang3, Dominik Lewandowski2, Zhiqian Dong2, Seth Blackshaw3,4, Krzysztof Palczewski2,5,6.   

Abstract

Age-related macular degeneration (AMD) is a chronic, multifactorial disorder and a leading cause of blindness in the elderly. Characterized by progressive photoreceptor degeneration in the central retina, disease progression involves epigenetic changes in chromatin accessibility resulting from environmental exposures and chronic stress. Here, we report that a photosensitive mouse model of acute stress-induced photoreceptor degeneration recapitulates the epigenetic hallmarks of human AMD. Global epigenomic profiling was accomplished by employing an Assay for Transposase-Accessible Chromatin using Sequencing (ATAC-Seq), which revealed an association between decreased chromatin accessibility and stress-induced photoreceptor cell death in our mouse model. The epigenomic changes induced by light damage include reduced euchromatin and increased heterochromatin abundance, resulting in transcriptional and translational dysregulation that ultimately drives photoreceptor apoptosis and an inflammatory reactive gliosis in the retina. Of particular interest, pharmacological inhibition of histone deacetylase 11 (HDAC11) and suppressor of variegation 3-9 homolog 2 (SUV39H2), key histone-modifying enzymes involved in promoting reduced chromatin accessibility, ameliorated light damage in our mouse model, supporting a causal link between decreased chromatin accessibility and photoreceptor degeneration, thereby elucidating a potential new therapeutic strategy to combat AMD.
© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Year:  2020        PMID: 32691052      PMCID: PMC7471509          DOI: 10.1093/hmg/ddaa158

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  45 in total

1.  Increased cell-to-cell variation in gene expression in ageing mouse heart.

Authors:  Rumana Bahar; Claudia H Hartmann; Karl A Rodriguez; Ashley D Denny; Rita A Busuttil; Martijn E T Dollé; R Brent Calder; Gary B Chisholm; Brad H Pollock; Christoph A Klein; Jan Vijg
Journal:  Nature       Date:  2006-06-22       Impact factor: 49.962

2.  Comprehensive Integration of Single-Cell Data.

Authors:  Tim Stuart; Andrew Butler; Paul Hoffman; Christoph Hafemeister; Efthymia Papalexi; William M Mauck; Yuhan Hao; Marlon Stoeckius; Peter Smibert; Rahul Satija
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

3.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

4.  In vivo function of the orphan nuclear receptor NR2E3 in establishing photoreceptor identity during mammalian retinal development.

Authors:  Hong Cheng; Tomas S Aleman; Artur V Cideciyan; Ritu Khanna; Samuel G Jacobson; Anand Swaroop
Journal:  Hum Mol Genet       Date:  2006-07-25       Impact factor: 6.150

5.  Reprogramming of adult rod photoreceptors prevents retinal degeneration.

Authors:  Cynthia L Montana; Alexander V Kolesnikov; Susan Q Shen; Connie A Myers; Vladimir J Kefalov; Joseph C Corbo
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

6.  Human aging and disease: Lessons from age-related macular degeneration.

Authors:  Jennings Luu; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

7.  Photoreceptor proteins initiate microglial activation via Toll-like receptor 4 in retinal degeneration mediated by all-trans-retinal.

Authors:  Hideo Kohno; Yu Chen; Brian M Kevany; Eric Pearlman; Masaru Miyagi; Tadao Maeda; Krzysztof Palczewski; Akiko Maeda
Journal:  J Biol Chem       Date:  2013-04-09       Impact factor: 5.157

8.  The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Nucleic Acids Res       Date:  2013-04-04       Impact factor: 16.971

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Immuno-modulatory Effect of IFN-gamma in AMD and its Role as a Possible Target for Therapy.

Authors:  Kailun Jiang; Sijia Cao; Jing Z Cui; Joanne A Matsubara
Journal:  J Clin Exp Ophthalmol       Date:  2013-02-26
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  2 in total

1.  Inhibition of Epigenetic Modifiers LSD1 and HDAC1 Blocks Rod Photoreceptor Death in Mouse Models of Retinitis Pigmentosa.

Authors:  Evgenya Y Popova; Yuka Imamura Kawasawa; Samuel Shao-Min Zhang; Colin J Barnstable
Journal:  J Neurosci       Date:  2021-06-30       Impact factor: 6.167

Review 2.  Epigenetic regulation of retinal development.

Authors:  Reza Raeisossadati; Merari F R Ferrari; Alexandre Hiroaki Kihara; Issam AlDiri; Jeffrey M Gross
Journal:  Epigenetics Chromatin       Date:  2021-02-09       Impact factor: 4.954

  2 in total

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