Literature DB >> 32686577

Epigenetic mechanisms regulating COVID-19 infection.

Sarantis Chlamydas1, Athanasios G Papavassiliou1, Christina Piperi1.   

Abstract

Coronavirus disease 2019 (COVID-2019) outbreak originating in December 2019 in Wuhan, China has emerged as a global threat to human health. The highly contagious SARS-CoV-2 infection and transmission presents a diversity of human host and increased disease risk with advancing age, highlighting the importance of in-depth understanding of its biological properties. Structural analyses have elucidated hot spots in viral binding domains, mutations, and specific proteins in the host such as the receptor angiotensin-converting enzyme 2 (ACE2) and the transmembrane protease serine 2 (TMPRSS2) to be implicated in cell entry and viral infectivity. Furthermore, epigenetic changes that regulate chromatin structure have shown a major impact in genome stabilization and maintenance of cellular homoeostasis and they have been implicated in the pathophysiology of the virus infection. Epigenetic research has revealed that global DNA methylation along with ACE2 gene methylation and post-translational histone modifications may drive differences in host tissue-, biological age- and sex-biased patterns of viral infection. Moreover, modulation of the host cells epigenetic landscape following infection represents a molecular tool used by viruses to antagonize cellular signalling as well as sensing components that regulate the induction of the host innate immune and antiviral defence programmes in order to enhance viral replication and infection efficiency. In this review, we provide an update of the main research findings at the interface of epigenetics and coronavirus infection. In particular, we highlight the epigenetic factors that interfere with viral replication and infection and may contribute to COVID-19 susceptibility, offering new ways of thinking in respect to host viral response.

Entities:  

Keywords:  ACE2; COVID-19; DNA methylation; X-linked genes; histone PTMs; virus infection

Mesh:

Substances:

Year:  2020        PMID: 32686577      PMCID: PMC7901548          DOI: 10.1080/15592294.2020.1796896

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  34 in total

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Journal:  Annu Rev Genet       Date:  2018-09-26       Impact factor: 16.830

Review 2.  The pivotal regulatory landscape of RNA modifications.

Authors:  Sheng Li; Christopher E Mason
Journal:  Annu Rev Genomics Hum Genet       Date:  2014-06-02       Impact factor: 8.929

3.  Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours.

Authors:  Loren M Lasko; Clarissa G Jakob; Rohinton P Edalji; Wei Qiu; Debra Montgomery; Enrico L Digiammarino; T Matt Hansen; Roberto M Risi; Robin Frey; Vlasios Manaves; Bailin Shaw; Mikkel Algire; Paul Hessler; Lloyd T Lam; Tamar Uziel; Emily Faivre; Debra Ferguson; Fritz G Buchanan; Ruth L Martin; Maricel Torrent; Gary G Chiang; Kannan Karukurichi; J William Langston; Brian T Weinert; Chunaram Choudhary; Peter de Vries; John H Van Drie; David McElligott; Ed Kesicki; Ronen Marmorstein; Chaohong Sun; Philip A Cole; Saul H Rosenberg; Michael R Michaelides; Albert Lai; Kenneth D Bromberg
Journal:  Nature       Date:  2017-09-27       Impact factor: 49.962

Review 4.  Role of RNA modifications in cancer.

Authors:  Isaia Barbieri; Tony Kouzarides
Journal:  Nat Rev Cancer       Date:  2020-04-16       Impact factor: 60.716

5.  Enhancer Activity Requires CBP/P300 Bromodomain-Dependent Histone H3K27 Acetylation.

Authors:  Ryan Raisner; Samir Kharbanda; Lingyan Jin; Edwin Jeng; Emily Chan; Mark Merchant; Peter M Haverty; Russell Bainer; Tommy Cheung; David Arnott; E Megan Flynn; F Anthony Romero; Steven Magnuson; Karen E Gascoigne
Journal:  Cell Rep       Date:  2018-08-14       Impact factor: 9.423

6.  Landscape of X chromosome inactivation across human tissues.

Authors:  Taru Tukiainen; Alexandra-Chloé Villani; Angela Yen; Manuel A Rivas; Jamie L Marshall; Rahul Satija; Matt Aguirre; Laura Gauthier; Mark Fleharty; Andrew Kirby; Beryl B Cummings; Stephane E Castel; Konrad J Karczewski; François Aguet; Andrea Byrnes; Tuuli Lappalainen; Aviv Regev; Kristin G Ardlie; Nir Hacohen; Daniel G MacArthur
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

7.  Epigenetic dysregulation of ACE2 and interferon-regulated genes might suggest increased COVID-19 susceptibility and severity in lupus patients.

Authors:  Amr H Sawalha; Ming Zhao; Patrick Coit; Qianjin Lu
Journal:  Clin Immunol       Date:  2020-04-08       Impact factor: 3.969

8.  The birth of the Epitranscriptome: deciphering the function of RNA modifications.

Authors:  Yogesh Saletore; Kate Meyer; Jonas Korlach; Igor D Vilfan; Samie Jaffrey; Christopher E Mason
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9.  MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.

Authors:  Vineet D Menachery; Alexandra Schäfer; Kristin E Burnum-Johnson; Hugh D Mitchell; Amie J Eisfeld; Kevin B Walters; Carrie D Nicora; Samuel O Purvine; Cameron P Casey; Matthew E Monroe; Karl K Weitz; Kelly G Stratton; Bobbie-Jo M Webb-Robertson; Lisa E Gralinski; Thomas O Metz; Richard D Smith; Katrina M Waters; Amy C Sims; Yoshihiro Kawaoka; Ralph S Baric
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-16       Impact factor: 11.205

10.  MODOMICS: a database of RNA modification pathways. 2017 update.

Authors:  Pietro Boccaletto; Magdalena A Machnicka; Elzbieta Purta; Pawel Piatkowski; Blazej Baginski; Tomasz K Wirecki; Valérie de Crécy-Lagard; Robert Ross; Patrick A Limbach; Annika Kotter; Mark Helm; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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  31 in total

Review 1.  Endocrine risk factors for COVID-19 in context of aging.

Authors:  L Máčová; M Bičíková; R Hampl
Journal:  Physiol Res       Date:  2021-12-16       Impact factor: 1.881

2.  African Genetic Representation in the Context of SARS-CoV-2 Infection and COVID-19 Severity.

Authors:  Desiree C Petersen; Chrystal Steyl; Denise Scholtz; Bienyameen Baker; Ibtisam Abdullah; Caitlin Uren; Marlo Möller
Journal:  Front Genet       Date:  2022-05-10       Impact factor: 4.772

3.  Exercise-induced myokines downregulates the ACE2 level in bronchial epithelial cells: Implications for SARS-CoV-2 prevention.

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4.  Molecular Fingerprinting of the Omicron Variant Genome of SARS-CoV-2 by SERS Spectroscopy.

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5.  A machine learning approach utilizing DNA methylation as an accurate classifier of COVID-19 disease severity.

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Journal:  Sci Rep       Date:  2022-10-19       Impact factor: 4.996

Review 6.  Thymoquinone: A Promising Natural Compound with Potential Benefits for COVID-19 Prevention and Cure.

Authors:  Osama A Badary; Marwa S Hamza; Rajiv Tikamdas
Journal:  Drug Des Devel Ther       Date:  2021-05-03       Impact factor: 4.162

Review 7.  Immunogenetic Association Underlying Severe COVID-19.

Authors:  Kendall McCoy; Autumn Peterson; Yun Tian; Yongming Sang
Journal:  Vaccines (Basel)       Date:  2020-11-20

8.  REAC Cervicobrachial Neuromodulation Treatment of Depression, Anxiety, and Stress During the COVID-19 Pandemic.

Authors:  Ana Rita Pinheiro Barcessat; Marina Nolli Bittencourt; Larissa Duarte Ferreira; Erick de Souza Neri; José Alfredo Coelho Pereira; Fabio Bechelli; Arianna Rinaldi
Journal:  Psychol Res Behav Manag       Date:  2020-11-09

Review 9.  The epigenetic implication in coronavirus infection and therapy.

Authors:  Sandra Atlante; Alessia Mongelli; Veronica Barbi; Fabio Martelli; Antonella Farsetti; Carlo Gaetano
Journal:  Clin Epigenetics       Date:  2020-10-21       Impact factor: 6.551

10.  DNA Methylation Architecture of the ACE2 gene in Nasal Cells.

Authors:  Andres Cardenas; Sheryl L Rifas-Shiman; Joanne E Sordillo; Dawn L DeMeo; Andrea A Baccarelli; Marie-France Hivert; Diane R Gold; Emily Oken
Journal:  medRxiv       Date:  2020-09-16
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