Literature DB >> 32682969

Integrated transcriptomic and metabolomic analyses of glutamine metabolism genes unveil key players in Oryza sativa (L.) to ameliorate the unique and combined abiotic stress tolerance.

Pandiyan Muthuramalingam1, Rajendran Jeyasri2, Anthonymuthu Selvaraj2, Shunmugiah Karutha Pandian2, Manikandan Ramesh3.   

Abstract

Plants can be considered to biosynthesize the specialized metabolites to adapt to various environmental stressors mainly on abiotic stresses (AbS). Among specialized metabolites, glutamine (Gln) is an essential plant metabolite to achieve sustainable plant growth, yield and food security. In this pilot study, swe employed computational metabolomics genome wide association survey (cmGWAS) of Gln metabolite profiling in Oryza sativa, targeting at the identification of abiotic stress responsible (AbSR) - Gln metabolite producing genes (GlnMPG). Identified 5 AbSR-GlnMPG alter the metabolite levels and play a predominant role in delineating the physiological significance of rice. These genes were systematically analysed for their biological features via OryzaCyc. Spatio-temporal and plant hormonal expression pattern of AbSR-GlnMPG was analysed and their differential expression profiling were noted in 48 different tissues and hormones, respectively. Furthermore, comparative ideogram of these genes revealed the chromosomal synteny with C4 grass genomes. Molecular crosstalks of these proteins, unravelled the various metabolic interaction. The systems expression profiling of AbSR-GlnMPG will lead to unravel the metabolite signaling and putative responses in multiple AbS. On the whole, this holistic study provides deeper insights on biomolecular features of AbSR-GlnMPG, which could be analysed further to decipher their functional metabolisms in AbS dynamism.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Abiotic stress; Chromosomal mapping; Glutamine; Phytohormones; Spatio-temporal; cmGWAS

Mesh:

Substances:

Year:  2020        PMID: 32682969     DOI: 10.1016/j.ijbiomac.2020.07.143

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  4 in total

Review 1.  Omics and CRISPR-Cas9 Approaches for Molecular Insight, Functional Gene Analysis, and Stress Tolerance Development in Crops.

Authors:  Muhammad Khuram Razzaq; Muqadas Aleem; Shahid Mansoor; Mueen Alam Khan; Saeed Rauf; Shahid Iqbal; Kadambot H M Siddique
Journal:  Int J Mol Sci       Date:  2021-01-28       Impact factor: 5.923

2.  Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model Plant Oryza sativa (L.) Unravel Potential Candidates Involved in Abiotic Stress Signaling.

Authors:  Pandiyan Muthuramalingam; Rajendran Jeyasri; Anthonymuthu Selvaraj; Hyunsuk Shin; Jen-Tsung Chen; Lakkakula Satish; Qiang-Sheng Wu; Manikandan Ramesh
Journal:  Front Genet       Date:  2022-07-08       Impact factor: 4.772

Review 3.  Advances in Metabolomics-Driven Diagnostic Breeding and Crop Improvement.

Authors:  Ali Razzaq; David S Wishart; Shabir Hussain Wani; Muhammad Khalid Hameed; Muhammad Mubin; Fozia Saleem
Journal:  Metabolites       Date:  2022-06-02

Review 4.  Multi-Omics and Integrative Approach towards Understanding Salinity Tolerance in Rice: A Review.

Authors:  Pandiyan Muthuramalingam; Rajendran Jeyasri; Kasinathan Rakkammal; Lakkakula Satish; Sasanala Shamili; Adhimoolam Karthikeyan; Alaguvel Valliammai; Arumugam Priya; Anthonymuthu Selvaraj; Pandiyan Gowri; Qiang-Sheng Wu; Shunmugiah Karutha Pandian; Hyunsuk Shin; Jen-Tsung Chen; Venkidasamy Baskar; Muthu Thiruvengadam; Manoharan Akilan; Manikandan Ramesh
Journal:  Biology (Basel)       Date:  2022-07-07
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.