| Literature DB >> 32678231 |
João Octávio Sales Passos1, Marcelo Victor Dos Santos Alves2, Camilo L M Morais3, Francis L Martin4, Antônio Felipe Cavalcante1, Telma Maria Araújo Moura Lemos5, Shayanne Moura5, Daniel L D Freitas2, João Vitor Medeiros Mariz2, Jean Lucas Carvalho2, Kássio M G Lima2, Rodrigo Pegado6.
Abstract
Fibromyalgia is a rheumatologic condition characterized by multiple and chronic body pain, and other typical symptoms such as intense fatigue, anxiety and depression. It is a very complex disease where treatment is often made by non-medicated alternatives in order to alleviate symptoms and improve the patient's quality of life. Herein, we propose a method to detect patients with fibromyalgia (n = 252, 126 controls and 126 patients with fibromyalgia) through the analysis of their blood plasma using attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy in conjunction with chemometric techniques, hence, providing a low-cost, fast and accurate diagnostic approach. Different chemometric algorithms were tested to classify the spectral data; genetic algorithm with linear discriminant analysis (GA-LDA) achieved the best diagnostic results with a sensitivity of 89.5% in an external test set. The GA-LDA model identified 24 spectral wavenumbers responsible for class separation; amongst these, the Amide II (1,545 cm-1) and proteins (1,425 cm-1) were identified to be discriminant features. These results reinforce the potential of ATR-FTIR spectroscopy with multivariate analysis as a new tool to screen and detect patients with fibromyalgia in a fast, low-cost, non-destructive and minimally invasive fashion.Entities:
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Year: 2020 PMID: 32678231 PMCID: PMC7366631 DOI: 10.1038/s41598-020-68781-x
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Socio-demographic and clinical characteristics.
| Outcomes | Fibromyalgia | Control | p value |
|---|---|---|---|
| (Mean ± SD) | (Mean ± SD) | ||
| Age | 48.02 ± 10.03 | 49.84 ± 11.42 | 0.471 |
| FIQ | 75.03 ± 13.97 | 27.2 ± 21.35 | 0.0001 |
| Anxiety (HAS) | 38.05 ± 9.26 | 18.18 ± 11.93 | 0.001 |
| VAS | 5.74 ± 2.41 | 1.77 ± 2.25 | 0.0001 |
| SF-36 total | 53.39 ± 20.51 | 113.6 ± 44.58 | 0.0001 |
| SF-36 physical | 23.58 ± 9.17 | 58.69 ± 20.94 | 0.0001 |
| SF-36 mental | 29.79 ± 12.39 | 59.57 ± 19.40 | 0.0001 |
| 0.0003 | |||
| 1 minimum wage | 6.7 | 29.4 | |
| 2 to 3 minimum wage | 53.3 | 41.2 | |
| 4 minimum wage or more | 33.3 | 11.8 | |
| Unreported | 6.7 | 17.6 | |
| 0.03 | |||
| Married | 60 | 41.2 | |
| Never married | 26.7 | 41.2 | |
| Widowed | 6.7 | 5.9 | |
| Divorced | 6.7 | 11.8 | |
| Not respond | |||
| 0.802 | |||
| Elementary (incomplete) | 0 | 5.9 | |
| Elementary | 26.7 | 23.5 | |
| Secondary | 26.7 | 41.2 | |
| University | 46.7 | 29.4 |
Numeric data were calculated using unpaired t test. Categorical data were calculated using Chi-Square test.
SD standard deviation, FIQ Fibromyalgia Impact Questionnaire, VAS Visual Analogue Scale; HAS Hamilton Anxiety Scale, SF-36 Short Form 36 Health Survey.
aBrazilian National Minimum Wage, US$ 252.14 per month.
Figure 1Raw and pre-processed spectra in the biofingerprint region. (a) Raw spectra; and (b) mean pre-processed spectra for case (fibromyalgia) and controls.
Figures of merit for different algorithms applied to classify case (fibromyalgia) and controls in the test set.
| Algorithm | Accuracy (%) | Sensitivity (%) | Specificity (%) |
|---|---|---|---|
| PCA-LDA | 60.5 | 68.4 | 52.6 |
| PCA-QDA | 65.8 | 73.7 | 57.9 |
| PCA-SVM | 68.4 | 78.9 | 57.9 |
| SPA-LDA | 63.1 | 57.9 | 68.4 |
| SPA-QDA | 63.2 | 68.4 | 57.9 |
| SPA-SVM | 70.1 | 73.7 | 68.4 |
| GA-LDA | |||
| GA-QDA | 60.5 | 47.4 | 73.7 |
| GA-SVM | 57.9 | 57.9 | 57.9 |
The best algorithm (GA-LDA) is highlighted in bold.
Figure 2GA-LDA results for classifying case (fibromyalgia) and controls. (a) Discriminant function graph for the samples in the test; and (b) GA-LDA selected wavenumbers.
Tentative assignment of the spectral markers selected by GA-LDA.
| Wavenumber (cm−1) | Tentative assignment |
|---|---|
| 943 | Phosphodiester region |
| 959 | Symmetric stretching vibration of |
| 974 | OCH3 stretching in polysaccharides |
| 1,078 | Phosphate I in RNA |
| 1,113 | P-O-C symmetric stretching |
| 1,121 | Symmetric phosphodiester stretching band RNA |
| 1,134 | C–OH stretching band in oligosaccharide |
| 1,140 | C–O stretching in phosphate and oligosaccharides |
| 1,142 | C–O stretching in phosphate and oligosaccharides |
| 1,148 | C–O stretching in carbohydrates |
| 1,153 | Stretching vibrations of hydrogen-bonding C–OH groups |
| 1,159 | |
| 1,182 | Amide III |
| 1,192 | Collagen |
| 1,319 | Amide III |
| 1,385 | |
| 1,398 | CH3 symmetric deformation |
| 1,423 | |
| 1,477 | |
| 1,545 | Amide II in proteins |
| 1,622 | Peak of nucleic acids due to the base carbonyl stretching and ring breathing mode |
| 1,636 | |
| 1,668 | Amide I (anti-parallel |
| 1,798 |
ν: stretching vibration; δ: bending vibration.