| Literature DB >> 32674288 |
Samuel Zapién-Castillo1, Nancy P Díaz-Zavala1, José A Melo-Banda1, Duncan Schwaller2, Jean-Philippe Lamps2, Marc Schmutz2, Jérôme Combet2, Philippe J Mésini2,3.
Abstract
Some organic compounds are known to self-assemble into nanotubes in solutions, but the packing of the molecules into the walls of the tubes is known only in a very few cases. Herein, we study two compounds forming nanotubes inEntities:
Keywords: monoamide; nanotubes; organogelators; self-assembly
Mesh:
Substances:
Year: 2020 PMID: 32674288 PMCID: PMC7404320 DOI: 10.3390/ijms21144960
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Chemical structure of HUB-3 and HUB-4.
Figure 2Small-angle X-ray scattering (SAXS) intensities of a HUB-4/C6H12 gel (c = 4 wt.%) at different times, and intensities of neat HUB-4. Between 38 and 55 h, the intensities are the same as the curve for the 35−38 h interval. For clarity, each curve is shifted from the previous one by a factor of 10.
Figure 3FTIR spectra of HUB-4/C6H12 (c = 4 wt.%) and pure HUB-4 (powder) in the NH and CO stretching area. In both samples the amide groups are H-bonded with each other, but with different H-bonds.
Figure 4Freeze fractures of gels of HUB-3 in cyclohexane (2 wt.%). (A) large field view; (B) enlargement showing the ends of tubes. Black arrows: tubes; arrow heads: ends of tubes; white arrows: amorphous solvent; double arrow: lamellar aggregates.
Figure 5Freeze fractures of gels of HUB-4 in cyclohexane (2 wt.%). (A) large field view; (B) enlargement showing the end of tubes. Black arrows: tubes; arrow heads: ends of tubes; white arrows: amorphous solvent.
Figure 6Intensities scattered by gels of HUB-3 and HUB-4 in cyclohexane (2 wt.%).
Figure 7Intensity scattered by HUB-4 (2 wt.% in C6H12) and fits with the models of homogeneous tube and with the three-layer model. The parameters of the fits 1 and 2 are given in Table 1.
Figure 8Model of tube with three layers. (A) definition of the different radiuses; (B) radial scattering length density profile ρ(r).
Parameters of the fits with the three-layer model.
| Parameters | Fit 1 | Fit 2 |
|---|---|---|
| 10.4 | 6.2 | |
| 23.1 | 28.6 | |
| 10.4 | 6.2 | |
| total wall thickness (Å) | 43.9 | 41.0 |
| 53.2 | 55.0 | |
| 11.21 | 12.81 | |
| 8.84 | 8.65 | |
| 11.21 | 11.85 | |
| 7.55 | 7.55 | |
|
| 1 | 1.07 |
| Δ | 3.3 | 3.4 |
| background (cm−1) | 0.0015 | 0.0015 |
| outer diameter (nm) | 19.4 | 19.2 |
| center-to-center dist. (nm) | 19.4 | 20.5 |
Estimated densities and scattering length density of different parts of HUB-4.
| Part of the Molecule | Estimated Density a | Scattering Length Density |
|---|---|---|
| Amide chains b | 1.04 | 9.92 |
| O–C6H4–COO– b | 1.55 | 19.63 |
| –C4H9 c | 0.81 | 7.90 |
| OC6H4COOC4H9 | 1.23 | 11.57 |
a Estimated by incremental volumes [23]; b Values for crystalline packing; c Values for amorphous state.
Figure 9Proposed model for the self-assembly of HUB-4. The tilt angles are arbitrary. The amides are H-bonded with each other.
Figure 10Synthesis of (a) bromoamide Am-HU, (b) products HUB-3 and HUB-4 (n = 3, 4).