Literature DB >> 32674137

TCR-Seq Identifies Distinct Repertoires of Distant-Metastatic and Nondistant-Metastatic Thyroid Tumors.

Xiabin Lan1,2, Jun Cao2, Ke Ye2,3, Chao Zhang4, Qihong Zhang5, Xinyang Ge2,6, Changxi Wang4,7, Chunliu Zhang8, Zaixian Tai4, Wei Wei4, Yi Huang4, Xin Yi4, Zhuo Tan1, Chuanming Zheng9, Chao Chen1, Xin Zhu2, Jiafeng Wang1, Jiajie Xu9, Xuhang Zhu1, Minghua Ge9.   

Abstract

CONTEXT: Malignant thyroid tumor with distant metastasis is associated with poor outcome. Early detection of distant metastasis is of great clinical importance.
OBJECTIVE: Thyroid tumor infiltrated with T cells can serve as a biomarker for monitoring metastasis.
DESIGN: A retrospective analysis was performed of patient clinical samples collected between 2012 to 2018, using T-cell receptor sequencing (TCR-seq) for clinical exploration.
SETTING: This study took place at Zhejiang Cancer Hospital. PATIENTS: Sixty-eight patients with papillary thyroid cancer (PTC) (distinct metastatic status) and 21 patients with benign nodules were enrolled. All patients had not received any treatment before surgery. MAIN OUTCOME MEASURE: The characteristics of TCRβ complementary-determining region 3 (CDR3) for each patient were determined by high-throughput sequencing.
RESULTS: The TCRβ diversity of malignant tumors is significantly higher than benign nodules both in blood and tumor samples (Shannon index, blood, P < .01; tumor, P < .001). The malignant tumors with distant metastasis or invasiveness showed lower TCRβ diversity than nonmetastasis (Shannon index, P < .01) or noninvasive (Shannon index, P < .01) malignant tumors. Analysis of the Morisita-Horn similarity index indicated significant TCRβ repertoire similarity between tumor and blood in distant-metastatic patients (comparison with nonmetastasis, P < .05). According to the discrepancy of the CDR3 among patients with different clinicopathological status, the classifier was constructed to discriminate distant-metastatic individuals. A promising area under the curve value of 83.8% was obtained with the number of overlapping CDR3 clonotypes.
CONCLUSION: The availability and reliability of TCR-seq render it prospective to translate these intrinsic attributes into clinical practice for monitoring distant metastasis in PTC patients. © Endocrine Society 2020. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  ROC curve; TCR-seq; distant-metastatic PTC classifier; thyroid cancer

Mesh:

Substances:

Year:  2020        PMID: 32674137     DOI: 10.1210/clinem/dgaa452

Source DB:  PubMed          Journal:  J Clin Endocrinol Metab        ISSN: 0021-972X            Impact factor:   5.958


  2 in total

1.  Identification and validation of potential novel biomarkers to predict distant metastasis in differentiated thyroid cancer.

Authors:  Wenlong Wang; Cong Shen; Yunzhe Zhao; Botao Sun; Ning Bai; Xinying Li
Journal:  Ann Transl Med       Date:  2021-07

2.  DeepLION: Deep Multi-Instance Learning Improves the Prediction of Cancer-Associated T Cell Receptors for Accurate Cancer Detection.

Authors:  Ying Xu; Xinyang Qian; Xuanping Zhang; Xin Lai; Yuqian Liu; Jiayin Wang
Journal:  Front Genet       Date:  2022-04-11       Impact factor: 4.772

  2 in total

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