| Literature DB >> 32670515 |
Shaimaa Sahmoud1, Mostafa S Ibrahim2, Eman A Toraih3,4, Noha Kamel5, Manal S Fawzy6,7, Samar Elfiky1.
Abstract
BACKGROUND: The reduced rate of bone formation despite the availability of vitamin D has been reported in β-thalassemia. Genetic factors, together with environmental ones, could be implicated in this condition. Since vitamin D binding protein (VDBP) maintains bioavailability of vitamin D which binds to vitamin D receptor (VDR)-retinoid X receptor alpha (RXRA) heterodimer to exert its molecular actions, we speculated that vitamin D metabolic-axis expression signature and variants could be potential molecular candidates for bone turnover/disease in thalassemia. To this end, this study aims to analyze VDR/RXRA expression signature, and two VDBP variants in a pilot sample of Egyptian β-thalassemia children in correlation with bone mineral density (BMD). PATIENTS AND METHODS: Forty-four well-chelated β-thalassemia children and 40 unrelated controls were enrolled. The serum bone chemistry profile was measured. Peripheral blood mononuclear cells (PBMN) VDR/RXRA expression levels were quantified by Real-Time quantitative reverse transcription-polymerase chain reaction (qRT-PCR). VDBP rs7041 and rs4588 variants were identified by Real-Time allelic discrimination assay. All patients were subjected to lumbar-spine Dual-energy X-ray absorptiometry (DEXA).Entities:
Keywords: Bone mineral density; Gene expression; Genotyping; RXRA; Real-Time PCR; Single nucleotide polymorphism; Thalassemia; VDBP; VDR
Year: 2020 PMID: 32670515 PMCID: PMC7340238 DOI: 10.4084/MJHID.2020.037
Source DB: PubMed Journal: Mediterr J Hematol Infect Dis ISSN: 2035-3006 Impact factor: 2.576
The designed primers using Primer3 and UCSC genome browser.
| Gene | Strand | Primers | Product length |
|---|---|---|---|
| Forward | AGATGGACAAGACGGAGCTG | 120 bp | |
| Reverse | CCAAGGACGCATAGACCTTC | ||
| Forward | GGAAGTGCAGAGGAAGCGGGAGATG | 380 bp | |
| Reverse | AGTGCTGGGACAGCTCTAGGGTCAC | ||
| Forward | CGGATTTGGTCGTATTGGG | 208 bp | |
| Reverse | CTGGAAGATGGTGATGGGATT |
RXRA: retinoid X receptor alpha; VDR: vitamin D receptor; GAPDH: Glyceraldehyde 3-phosphate dehydrogenase, bp: base pairing. For checking in silico PCR amplification, UCSC genome browser (hosted by the University of California, Santa Cruz) was used (https://genome.ucsc.edu/).
The baseline characteristics and biochemical profile of thalassemia children and controls.
| Variables | Thalassemia Children (n=44) | Controls (n=40) | |
|---|---|---|---|
|
| |||
| Sex | |||
| Males (%) | 24 (54.5%) | 19 (47.5%) | 0.519 |
| Females (%) | 20 (45.5%) | 21 (52.5%) | |
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| Age (mean ± SD) years | 7.3±2.7 | 7.6±1.8 | 0.488 |
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| Height (Z score) | −.056±1.16 | .063±.79 | |
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| BMI (Z score) | .198±1.13 | .217±.8 | .929 |
|
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| Vitamin D level (ng/ml) | 41.6±30.1 | 18.7±5.8 | |
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| Deficient Vitamin D (%) | 6 (13.6%) | 4 (10.0%) | |
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| Insufficient Vitamin D (%) | 10 (22.7%) | 33 (82.5%) | |
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| Sufficient Vitamin D (%) | 28 (63.7%) | 3 (7.5%) | |
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| Serum Calcium (mg/dl) | 9.0±0.7 | 8.2±0.6 | |
|
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| Serum Phosphorus (mg/dl) | 4.8±0.8 | 4.5±0.5 | 0.083 |
|
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| Alkaline phosphatase (IU/l) | 158.6±57.9 | 126.8±29.8 | |
|
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| Parathyroid hormone (pg/ml) | 22.2±13.1 | 38.4±21.2 | |
Student-t test;
Mann-Whitney test;
Chi -square test;
Bold values are statistically significant at P-value < 0.05.
Figure 1Expression profile of VDR and RXRA in β-thalassemia patients and controls
Values are presented as medians. The box defines upper and lower quartiles (25% and 75%, respectively) and the error bars indicate upper and lower adjacent limits. Vitamin D was measured by ELISA, while gene expression was quantified using Real-Time PCR. Fold-change was normalized to GAPDH and calculated using the delta-delta CT method [= 2 (−ΔΔCT)] compared to controls with relative expression at 1.0. Mann-Whitney U test was used. Statistically significant at P value < 0.05.
The genotype analysis of VDBP polymorphisms.
| Genetic model | Genotype | Controls (n=40) | Patients (n=44) | OR (95% CI) | |
|---|---|---|---|---|---|
| 0.651 | 0.055 | ||||
| | 19 (47.5) | 19 (43.2) | 0.145 | ||
| 18 (45.0) | 15 (34.1) | 0.83 (0.32–2.12) | |||
| 3 (7.5) | 10 (22.7) | 3.33 (0.79–14.0) | |||
| | 19 (47.5) | 19 (43.2) | 0.526 | ||
| 21 (52.5) | 25 (56.8) | 1.19 (0.50–2.81) | |||
| | 37 (92.5) | 34 (77.3) | 0.053 | ||
| 3 (7.5) | 10 (22.7) | 3.62 (0.9–14.2) | |||
| | 56 (70.0) | 53 (66.3) | 0.185 | ||
| 24 (300) | 35 (43.7) | 1.53 (0.80–2.94) | |||
| | 0.563 | 0.117 | |||
| | 21 (52.5) | 24 (54.5) | 0.316 | ||
| 17 (42.5) | 14 (31.8) | 0.72 (0.28–1.80) | |||
| 2 (5.0) | 6 (13.6) | 2.62 (0.47–14.4) | |||
| | 21 (52.5) | 24 (54.5) | 0.851 | ||
| 19 (47.5) | 20 (45.5) | 0.92 (0.39–2.17) | |||
| | 38 (98.0) | 38 (86.4) | 0.178 | ||
| 2 (5.0) | 6 (13.6) | 3.0 (0.56–15.8) | |||
| | 59 (73.7) | 62 (77.5) | 0.634 | ||
| 21 (26.3) | 26 (32.5) | 1.17 (0.59–2.33) |
VDBP: vitamin D binding protein. Values are shown as number (%). HWE P; P value of Hardy-Weinberg equilibrium. Chi square (χ2) or Fisher's exact tests were used. OR (95% CI), odds ratio and confidence interval.
() represented both heterozygote and homozygote comparison models. Statistically significant results were set at P-value < 0.05.
Association of VDBP variants with clinical data in β-thalassemia patients.
| Variables | ||||||||
|---|---|---|---|---|---|---|---|---|
| TT | TG | GG | CC | CA | AA | |||
| 19 | 15 | 10 | 24 | 14 | 6 | |||
| Age (years) | 6.7±2.3 | 8.3±3.1 | 6.7±2.5 | 0.270 | 7.2±2.7 | 7.1±2.8 | 7.6±2.7 | 0.875 |
| Sex | ||||||||
| Female | 9 (45.0) | 8 (40.0) | 3 (15.0) | 0.505 | 12 (60.0) | 60 (30.0) | 2 (10.0) | 0.743 |
| Male | 10 (41.7) | 7 (29.2) | 7 (29.2) | 12 (50.0) | 8 (33.3) | 4 (16.7) | ||
| Weight (Kg) | 21.4±49 | 28.3±10.4 | 21.3±7.8 | 23.9±9.7 | 23.6±6.6 | 23.5±6.4 | 0.958 | |
| Height (cm) | 115±13 | 126±16 | 113±17 | 0.077 | 118±18 | 117±14 | 121±12 | 0.768 |
| Clinical type | ||||||||
| Intermedia | 4 (50.0) | 3 (37.5) | 1 (12.5) | 0.745 | 3 (37.5) | 4 (50.0) | 1 (12.5) | 0.462 |
| Major | 15 (41.7) | 12 (33.3) | 9 (25.0) | 21 (58.3) | 10 (27.8) | 5 (13.9) | ||
| Transfusion (mo) | 1.3±0.6 | 1.8±0.9 | 1.4±0.8 | 0.236 | 1.6±0.8 | 1.2±0.6 | 1.3±0.8 | 0.407 |
| Bone density | ||||||||
| Normal | 4 (33.3) | 6 (50.0) | 2 (16.7) | 6 (50.0) | 4 (33.3) | 2 (16.7) | 0.581 | |
| Osteopenia | 12 (52.2) | 3 (13.0) | 8 (34.8) | 11 (47.8) | 9 (39.1) | 3 (13.0) | ||
| Osteoporosis | 3 (33.3) | 6 (66.7) | 0 (0.0) | 7 (77.8) | 1 (11.1) | 1 (11.1) | ||
| BMD | ||||||||
| BMD-L2 | 0.5±0.1 | 0.5±0.07 | 0.5±0.04 | 0.074 | 0.5±0.06 | 0.5±0.1 | 0.5±0.08 | 0.778 |
| BMD-L3 | 0.5±0.1 | 0.5±0.07 | 0.5±0.04 | 0.083 | 0.5±0.07 | 0.5±0.1 | 0.5±0.09 | 0.984 |
| BMD-L4 | 0.5±0.1 | 0.5±0.13 | 0.4±0.07 | 0.5±0.11 | 0.4±0.1 | 0.5±0.13 | 0.982 | |
| ZS | ||||||||
| ZS-L2 | −1.8±1.3 | −1.6±1.2 | −1.4±0.4 | 0.822 | −1.4±0.9 | −1.8±1.0 | −2.2±1.8 | 0.206 |
| ZS-L3 | −1.5±1.6 | −1.5±1.7 | −1.3±0.6 | 0.821 | −1.2±1.1 | −1.7±1.7 | −2.0±1.9 | 0.735 |
| ZS-L4 | −1.5±1.3 | −1.9±1.8 | −1.3±0.4 | 0.861 | −1.5±1.1 | −2.1±2.0 | −1.1±0.6 | 0.293 |
Data are presented as number (percentage) or mean ± standard deviation. Chi-square and one-way ANOVA tests were used. Bold values indicate statistically significant P-values at < 0.05. VDBP= vitamin D binding protein. BMD= bone mineral density as; ZS = Z score; L2, 3, and 4 = lumbar 2, 3, and 4 regions. BMD and Z scores are presented as standard deviations.