| Literature DB >> 32662814 |
Rong Li1, Ka Wu1, Yu Li1, Xiao Liang1, Keng Po Lai1, Jian Chen1.
Abstract
OBJECTIVE: Coronavirus disease 2019 (COVID-19) is a fatal and fast-spreading viral infection. To date, the number of COVID-19 patients worldwide has crossed over six million with over three hundred and seventy thousand deaths (according to the data from World Health Organization; updated on 2 June 2020). Although COVID-19 can be rapidly diagnosed, efficient clinical treatment of COVID-19 remains unavailable, resulting in high fatality. Some clinical trials have identified vitamin C (VC) as a potent compound pneumonia management. In addition, glycyrrhizic acid (GA) is clinically as an anti-inflammatory medicine against pneumonia-induced inflammatory stress. We hypothesized that the combination of VC and GA is a potential option for treating COVID-19.Entities:
Keywords: COVID-19; bioinformatics analysis; biotarget; glycyrrhizic acid; vitamin C
Mesh:
Substances:
Year: 2021 PMID: 32662814 PMCID: PMC7462346 DOI: 10.1093/bib/bbaa141
Source DB: PubMed Journal: Brief Bioinform ISSN: 1467-5463 Impact factor: 11.622
Figure 1A stepwise workflow showed the combined antiviral activity of VC and GA against COVID-19 through network pharmacology. We identified candidate biotargets of VC and GA, then determined and mapped their combined core biotargets against COVID-19. A PPI diagram of VC + GA against COVID-19 was generated. Our analysis revealed the pharmacological functions and molecular pathways of VC + GA action against COVID-19.
Figure 2Targets of sole VC or sole GA against COVID-19. (A) Venn diagram and PPI network showed the 34 targets of VC against COVID-19. (B) Venn diagram and PPI network exhibited the 28 targets of GA against COVID-19.
Figure 3Biological processes and molecular pathways associated with core targets of VC against COVID-19. (A) Biological processes [from GO analysis] were presented by bubble diagrams with count algorithms and P-adjust values. (B) All core biotargets of VC against COVID-19 were linked to the top 10 most enriched GO terms in Circro diagrams. (C) Molecular pathways (from KEGG analysis) were presented by bubble diagrams based on count algorithms and P-adjust values. (D) Identified core biotargets of VC against COVID-19 were associated with the 10 most enriched KEGG terms in Circro diagrams.
Figure 4Biological processes and molecular pathways associated with core targets of GA against COVID-19. (A) Biological processes were presented by bubble diagrams generated through count algorithms and P-adjust calculation. (B) Core biotargets of GA against COVID-19 were related to the top 10 enriched GO terms in Circro diagrams. (C) Molecular pathways (from KEGG analysis) were presented by bubble diagrams based on count algorithms and P-adjust values. (D) Core biotargets of GA against COVID-19 were linked to the top 10 enriched KEGG terms in Circro diagrams.
Figure 5Targets of combined VC and GA against COVID-19. Venn diagram highlighted the intersecting targets of VC in combination with GA as a drug for COVID-19. Using online databases, we identified 19 shared biotargets of VC + GA against COVID-19.
Top 10 biological processes of VC in combination with GA against COVID-19
| ID | Description | Gene symbol | Number of gene |
|---|---|---|---|
| GO:0018105 | Peptidyl-serine phosphorylation | PRKCE, PRKCB, MAPK1, EGFR, MAPK3, MAPK14, PTGS2 | 7 |
| GO:0018209 | Peptidyl-serine modification | PRKCE, PRKCB, MAPK1, EGFR, MAPK3, MAPK14, PTGS2 | 7 |
| GO:0022407 | Regulation of cell–cell adhesion | DPP4, MAPK14, LCK | 3 |
| GO:0032496 | Response to lipopolysaccharide | PRKCE, MAPK1, MAPK3, MAPK14, CCR5, PTGS2, PRKCA | 7 |
| GO:0042110 | T cell activation | DPP4, LCK | 2 |
| GO:0007596 | Blood coagulation | PRKCE, PRKCB, MAPK1, MAPK3, LCK, PRKCA | 6 |
| GO:0007159 | Leukocyte cell–cell adhesion | DPP4, LCK, PTPRC | 3 |
| GO:0071496 | Cellular response to external stimulus | MAPK1, EGFR, MAPK3, ATP1A1, PTGS2, PTPRC | 6 |
| GO:0002237 | Response to molecule of bacterial origin | PRKCE, MAPK1, MAPK3, MAPK14, CCR5, PTGS2, PRKCA | 7 |
| GO:0030168 | Platelet activation | PRKCE, PRKCB, MAPK1, MAPK3, LCK, PRKCA | 6 |
KEGG pathway of VC in combination with GA against COVID-19
| ID | Description | Gene symbol | Number of gene |
|---|---|---|---|
| hsa05163 | Human cytomegalovirus infection | PRKCB, MAPK1, EGFR, MAPK3, MAPK14, CCR5, PTGS2, PRKCA | 8 |
| hsa04726 | Serotonergic synapse | SLC6A4, CYP2D6, PRKCB, MAPK1, MAPK3, PTGS2, PTGS1, PRKCA | 8 |
| hsa01521 | EGFR tyrosine kinase inhibitor resistance | MAPK1, EGFR, MAPK3 | 3 |
| hsa04912 | GnRH signaling pathway | PRKCB, MAPK1, EGFR, MAPK3, MAPK14, PRKCA | 6 |
| hsa04933 | AGE-RAGE signaling pathway in diabetic complications | PRKCE, PRKCB, MAPK1, MAPK3, MAPK14, PRKCA | 6 |
| hsa04370 | VEGF signaling pathway | PRKCB, MAPK1, MAPK3, MAPK14, PTGS2, PRKCA | 6 |
| hsa05206 | MicroRNAs in cancer | PRKCE, PRKCB, MAPK1, EGFR, MAPK3, ABCB1, PTGS2, PRKCA | 8 |
| hsa04660 | TCR signaling pathway | MAPK1, MAPK3, MAPK14, LCK, PTPRC | 5 |
| hsa05223 | Non-small cell lung cancer | PRKCB, MAPK1, EGFR, MAPK3, PRKCA | 5 |
| hsa04960 | Aldosterone-regulated sodium reabsorption | PRKCB, MAPK1, MAPK3, ATP1A1, PRKCA | 5 |
| hsa05167 | Kaposi sarcoma-associated herpesvirus infection | MAPK1, MAPK3, MAPK14, CCR5, PTGS2 | 5 |
| hsa05214 | Glioma | PRKCB, MAPK1, EGFR, MAPK3, PRKCA | 5 |
| hsa05205 | Proteoglycans in cancer | PRKCB, MAPK1, EGFR, MAPK3, MAPK14, PRKCA | 6 |
| hsa04012 | ErbB signaling pathway | PRKCB, MAPK1, EGFR, MAPK3, PRKCA | 5 |
| hsa04666 | Fc gamma R-mediated phagocytosis | PRKCE, PRKCB, MAPK1, MAPK3, PRKCA, PTPRC | 6 |
Figure 6Biological processes and molecular pathways associated with core targets of combined VC + GA against COVID-19. (A) Heatmap showed GO biological processes of VC + GA against COVID-19. Optimal prioritization was determined via the -log10 (P.adjust) algorithm for visualization. (B) Heatmap uncovered KEGG signaling pathways of VC + GA against COVID-19. Different colors represented optimal prioritization of molecular pathways determined using the -log10 (P.adjust) algorithm.
Figure 7Interaction network of VC + GA target KEGG pathways against COVID-19. Detailed information on core biotargets, pharmacological functions and signaling pathways were presented.