Literature DB >> 32661383

A poly(thymine)-melamine duplex for the assembly of DNA nanomaterials.

Qian Li1, Jiemin Zhao1, Longfei Liu1, Sagun Jonchhe2, Felix J Rizzuto3, Shankar Mandal2, Huawei He4, Sansen Wei1, Hanadi F Sleiman5, Hanbin Mao6,7, Chengde Mao8,9.   

Abstract

The diversity of DNA duplex structures is limited by a binary pair of hydrogen-bonded motifs. Here we show that poly(thymine) self-associates into antiparallel, right-handed duplexes in the presence of melamine, a small molecule that presents a triplicate set of the hydrogen-bonding face of adenine. X-ray crystallography shows that in the complex two poly(thymine) strands wrap around a helical column of melamine, which hydrogen bonds to thymine residues on two of its three faces. The mechanical strength of the thymine-melamine-thymine triplet surpasses that of adenine-thymine base pairs, which enables a sensitive detection of melamine at 3 pM. The poly(thymine)-melamine duplex is orthogonal to native DNA base pairing and can undergo strand displacement without the need for overhangs. Its incorporation into two-dimensional grids and hybrid DNA-small-molecule polymers highlights the poly(thymine)-melamine duplex as an additional tool for DNA nanotechnology.

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Year:  2020        PMID: 32661383      PMCID: PMC7732259          DOI: 10.1038/s41563-020-0728-2

Source DB:  PubMed          Journal:  Nat Mater        ISSN: 1476-1122            Impact factor:   47.656


  43 in total

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Journal:  Chem Commun (Camb)       Date:  2008-08-22       Impact factor: 6.222

3.  How to distinguish isodesmic from cooperative supramolecular polymerisation.

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Journal:  Chemistry       Date:  2010-01-04       Impact factor: 5.236

4.  Using Small Molecules to Prepare Vesicles with Designable Shapes and Sizes via Frame-Guided Assembly Strategy.

Authors:  Yuanchen Dong; Zhongqiang Yang; Dongsheng Liu
Journal:  Small       Date:  2015-05-04       Impact factor: 13.281

5.  The construction of supramolecular systems.

Authors:  Ghislaine Vantomme; E W Meijer
Journal:  Science       Date:  2019-03-29       Impact factor: 47.728

6.  Visual detection of melamine in milk samples based on label-free and labeled gold nanoparticles.

Authors:  Hui Huang; Li Li; Guohua Zhou; Zhihong Liu; Qiao Ma; Yuqi Feng; Guoping Zeng; Philip Tinnefeld; Zhike He
Journal:  Talanta       Date:  2011-05-13       Impact factor: 6.057

7.  Long-Range Ordering of Blunt-Ended DNA Tiles on Supported Lipid Bilayers.

Authors:  Nicole Avakyan; Justin W Conway; Hanadi F Sleiman
Journal:  J Am Chem Soc       Date:  2017-08-21       Impact factor: 15.419

8.  Rolling replication of short DNA circles.

Authors:  A Fire; S Q Xu
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

Review 9.  Triplex DNA structures.

Authors:  M D Frank-Kamenetskii; S M Mirkin
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

10.  Experimentally investigating the origin of DNA/RNA on early Earth.

Authors:  Ramanarayanan Krishnamurthy
Journal:  Nat Commun       Date:  2018-12-12       Impact factor: 14.919

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  12 in total

1.  A dissipative pathway for the structural evolution of DNA fibres.

Authors:  Felix J Rizzuto; Casey M Platnich; Xin Luo; Yao Shen; Michael D Dore; Christophe Lachance-Brais; Alba Guarné; Gonzalo Cosa; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2021-08-09       Impact factor: 24.427

2.  Ensemble Sensing Using Single-Molecule DNA Copolymers.

Authors:  Sagun Jonchhe; Sangeetha Selvam; Deepak Karna; Shankar Mandal; Benjamin Wales-McGrath; Hanbin Mao
Journal:  Anal Chem       Date:  2020-09-08       Impact factor: 6.986

Review 3.  DNA origami nano-mechanics.

Authors:  Jiahao Ji; Deepak Karna; Hanbin Mao
Journal:  Chem Soc Rev       Date:  2021-11-01       Impact factor: 54.564

4.  Synthesis of Bifacial Peptide Nucleic Acids with Diketopiperazine Backbones.

Authors:  Shekaraiah Devari; Debmalya Bhunia; Dennis Bong
Journal:  Synlett       Date:  2022-04-28       Impact factor: 2.170

5.  A DNAzyme-augmented bioorthogonal catalysis system for synergistic cancer therapy.

Authors:  Yawen You; Hao Liu; Jiawei Zhu; Yibo Wang; Fang Pu; Jinsong Ren; Xiaogang Qu
Journal:  Chem Sci       Date:  2022-06-10       Impact factor: 9.969

6.  Single-Molecule Mechanochemical Sensing.

Authors:  Changpeng Hu; Rabia Tahir; Hanbin Mao
Journal:  Acc Chem Res       Date:  2022-04-14       Impact factor: 24.466

7.  Scalable One-Pot-Liquid-Phase Oligonucleotide Synthesis for Model Network Hydrogels.

Authors:  Guido Creusen; Cecilia Oluwadunsin Akintayo; Katja Schumann; Andreas Walther
Journal:  J Am Chem Soc       Date:  2020-09-16       Impact factor: 15.419

Review 8.  Unnatural bases for recognition of noncoding nucleic acid interfaces.

Authors:  Shiqin Miao; Yufeng Liang; Sarah Rundell; Debmalya Bhunia; Shekar Devari; Oliver Munyaradzi; Dennis Bong
Journal:  Biopolymers       Date:  2020-09-24       Impact factor: 2.505

9.  Screening of Minimalist Noncanonical Sites in Duplex DNA and RNA Reveals Context and Motif-Selective Binding by Fluorogenic Base Probes.

Authors:  Yufeng Liang; Shiqin Miao; Jie Mao; Shekaraiah Devari; Maricarmen Gonzalez; Dennis Bong
Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.236

10.  Functionalizing DNA nanostructures with natural cationic amino acids.

Authors:  Dong Wang; Chunfa Chen; Qian Liu; Qianwen Zhao; Di Wu; Yue Yuan; Chaowang Huang; Xiaorong Sun; Chunji Huang; David Tai Leong; Guansong Wang; Hang Qian
Journal:  Bioact Mater       Date:  2021-02-27
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