Literature DB >> 32661370

Biomolecular condensates undergo a generic shear-mediated liquid-to-solid transition.

Yi Shen1, Francesco Simone Ruggeri1, Daniele Vigolo2, Ayaka Kamada1, Seema Qamar3, Aviad Levin1, Christiane Iserman4, Simon Alberti4, Peter St George-Hyslop3,5, Tuomas P J Knowles6,7.   

Abstract

Membrane-less organelles resulting from liquid-liquid phase separation of biopolymers into intracellular condensates control essential biological functions, including messenger RNA processing, cell signalling and embryogenesis1-4. It has recently been discovered that several such protein condensates can undergo a further irreversible phase transition, forming solid nanoscale aggregates associated with neurodegenerative disease5-7. While the irreversible gelation of protein condensates is generally related to malfunction and disease, one case where the liquid-to-solid transition of protein condensates is functional, however, is that of silk spinning8,9. The formation of silk fibrils is largely driven by shear, yet it is not known what factors control the pathological gelation of functional condensates. Here we demonstrate that four proteins and one peptide system, with no function associated with fibre formation, have a strong propensity to undergo a liquid-to-solid transition when exposed to even low levels of mechanical shear once present in their liquid-liquid phase separated form. Using microfluidics to control the application of shear, we generated fibres from single-protein condensates and characterized their structural and material properties as a function of shear stress. Our results reveal generic backbone-backbone hydrogen bonding constraints as a determining factor in governing this transition. These observations suggest that shear can play an important role in the irreversible liquid-to-solid transition of protein condensates, shed light on the role of physical factors in driving this transition in protein aggregation-related diseases and open a new route towards artificial shear responsive biomaterials.

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Year:  2020        PMID: 32661370      PMCID: PMC7116851          DOI: 10.1038/s41565-020-0731-4

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   40.523


  41 in total

1.  Materials fabrication from Bombyx mori silk fibroin.

Authors:  Danielle N Rockwood; Rucsanda C Preda; Tuna Yücel; Xiaoqin Wang; Michael L Lovett; David L Kaplan
Journal:  Nat Protoc       Date:  2011-09-22       Impact factor: 13.491

2.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

3.  Mobility measurement by analysis of fluorescence photobleaching recovery kinetics.

Authors:  D Axelrod; D E Koppel; J Schlessinger; E Elson; W W Webb
Journal:  Biophys J       Date:  1976-09       Impact factor: 4.033

4.  Silk micrococoons for protein stabilisation and molecular encapsulation.

Authors:  Ulyana Shimanovich; Francesco S Ruggeri; Erwin De Genst; Jozef Adamcik; Teresa P Barros; David Porter; Thomas Müller; Raffaele Mezzenga; Christopher M Dobson; Fritz Vollrath; Chris Holland; Tuomas P J Knowles
Journal:  Nat Commun       Date:  2017-07-19       Impact factor: 14.919

5.  High-resolution CMOS MEA platform to study neurons at subcellular, cellular, and network levels.

Authors:  Jan Müller; Marco Ballini; Paolo Livi; Yihui Chen; Milos Radivojevic; Amir Shadmani; Vijay Viswam; Ian L Jones; Michele Fiscella; Roland Diggelmann; Alexander Stettler; Urs Frey; Douglas J Bakkum; Andreas Hierlemann
Journal:  Lab Chip       Date:  2015-05-14       Impact factor: 6.799

6.  Bayesian Inference of Forces Causing Cytoplasmic Streaming in Caenorhabditis elegans Embryos and Mouse Oocytes.

Authors:  Ritsuya Niwayama; Hiromichi Nagao; Tomoya S Kitajima; Lars Hufnagel; Kyosuke Shinohara; Tomoyuki Higuchi; Takuji Ishikawa; Akatsuki Kimura
Journal:  PLoS One       Date:  2016-07-29       Impact factor: 3.240

7.  Facile tuning of the mechanical properties of a biocompatible soft material.

Authors:  Daniele Vigolo; Shivaprakash N Ramakrishna; Andrew J deMello
Journal:  Sci Rep       Date:  2019-05-09       Impact factor: 4.379

8.  RNA Granules Hitchhike on Lysosomes for Long-Distance Transport, Using Annexin A11 as a Molecular Tether.

Authors:  Ya-Cheng Liao; Michael S Fernandopulle; Guozhen Wang; Heejun Choi; Ling Hao; Catherine M Drerup; Rajan Patel; Seema Qamar; Jonathon Nixon-Abell; Yi Shen; William Meadows; Michele Vendruscolo; Tuomas P J Knowles; Matthew Nelson; Magdalena A Czekalska; Greta Musteikyte; Mariam A Gachechiladze; Christina A Stephens; H Amalia Pasolli; Lucy R Forrest; Peter St George-Hyslop; Jennifer Lippincott-Schwartz; Michael E Ward
Journal:  Cell       Date:  2019-09-19       Impact factor: 41.582

9.  ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.

Authors:  Tetsuro Murakami; Seema Qamar; Julie Qiaojin Lin; Gabriele S Kaminski Schierle; Eric Rees; Akinori Miyashita; Ana R Costa; Roger B Dodd; Fiona T S Chan; Claire H Michel; Deborah Kronenberg-Versteeg; Yi Li; Seung-Pil Yang; Yosuke Wakutani; William Meadows; Rodylyn Rose Ferry; Liang Dong; Gian Gaetano Tartaglia; Giorgio Favrin; Wen-Lang Lin; Dennis W Dickson; Mei Zhen; David Ron; Gerold Schmitt-Ulms; Paul E Fraser; Neil A Shneider; Christine Holt; Michele Vendruscolo; Clemens F Kaminski; Peter St George-Hyslop
Journal:  Neuron       Date:  2015-10-29       Impact factor: 17.173

10.  Phase Separation of C9orf72 Dipeptide Repeats Perturbs Stress Granule Dynamics.

Authors:  Steven Boeynaems; Elke Bogaert; Denes Kovacs; Albert Konijnenberg; Evy Timmerman; Alex Volkov; Mainak Guharoy; Mathias De Decker; Tom Jaspers; Veronica H Ryan; Abigail M Janke; Pieter Baatsen; Thomas Vercruysse; Regina-Maria Kolaitis; Dirk Daelemans; J Paul Taylor; Nancy Kedersha; Paul Anderson; Francis Impens; Frank Sobott; Joost Schymkowitz; Frederic Rousseau; Nicolas L Fawzi; Wim Robberecht; Philip Van Damme; Peter Tompa; Ludo Van Den Bosch
Journal:  Mol Cell       Date:  2017-03-16       Impact factor: 17.970

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  16 in total

1.  Unraveling the Physicochemical Determinants of Protein Liquid-liquid Phase Separation by Nanoscale Infrared Vibrational Spectroscopy.

Authors:  Francesco S Ruggeri; Alyssa M Miller; Michele Vendruscolo; Tuomas P J Knowles
Journal:  Bio Protoc       Date:  2021-08-20

2.  Aging can transform single-component protein condensates into multiphase architectures.

Authors:  Adiran Garaizar; Jorge R Espinosa; Jerelle A Joseph; Georg Krainer; Yi Shen; Tuomas P J Knowles; Rosana Collepardo-Guevara
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

Review 3.  A conceptual framework for understanding phase separation and addressing open questions and challenges.

Authors:  Tanja Mittag; Rohit V Pappu
Journal:  Mol Cell       Date:  2022-06-07       Impact factor: 19.328

4.  Characterization of design grammar of peptides for regulating liquid droplets and aggregates of FUS.

Authors:  Kiyoto Kamagata; Rika Chiba; Ichiro Kawahata; Nanako Iwaki; Saori Kanbayashi; Kana Maeda; Hiroto Takahashi; Atsushi Hirano; Koji Fukunaga; Keisuke Ikeda; Tomoshi Kameda
Journal:  Sci Rep       Date:  2021-03-23       Impact factor: 4.379

Review 5.  Biophysical studies of phase separation integrating experimental and computational methods.

Authors:  Nicolas L Fawzi; Sapun H Parekh; Jeetain Mittal
Journal:  Curr Opin Struct Biol       Date:  2021-06-15       Impact factor: 7.786

6.  Evolution of Conformation, Nanomechanics, and Infrared Nanospectroscopy of Single Amyloid Fibrils Converting into Microcrystals.

Authors:  Jozef Adamcik; Francesco Simone Ruggeri; Joshua T Berryman; Afang Zhang; Tuomas P J Knowles; Raffaele Mezzenga
Journal:  Adv Sci (Weinh)       Date:  2020-12-11       Impact factor: 16.806

7.  Non-coding RNA suppresses FUS aggregation caused by mechanistic shear stress on pipetting in a sequence-dependent manner.

Authors:  Nesreen Hamad; Ryoma Yoneda; Masatomo So; Riki Kurokawa; Takashi Nagata; Masato Katahira
Journal:  Sci Rep       Date:  2021-05-04       Impact factor: 4.379

Review 8.  Emerging Silk Material Trends: Repurposing, Phase Separation and Solution-Based Designs.

Authors:  F Philipp Seib
Journal:  Materials (Basel)       Date:  2021-03-01       Impact factor: 3.623

9.  Drops and fibers - how biomolecular condensates and cytoskeletal filaments influence each other.

Authors:  Tina Wiegand; Anthony A Hyman
Journal:  Emerg Top Life Sci       Date:  2020-12-11

10.  Seeking Solvation: Exploring the Role of Protein Hydration in Silk Gelation.

Authors:  Peter R Laity; Chris Holland
Journal:  Molecules       Date:  2022-01-16       Impact factor: 4.411

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