Literature DB >> 32659633

Proposed model of the Dictyostelium cAMP receptors bound to cAMP.

Jack Calum Greenhalgh1, Aneesh Chandran2, Matthew Thomas Harper1, Graham Ladds1, Taufiq Rahman3.   

Abstract

3',5'-cyclic adenosine monophosphate (cAMP) is well known as a ubiquitous intracellular messenger regulating a diverse array of cellular processes. However, for a group of social amoebae or Dictyostelia undergoing starvation, intracellular cAMP is secreted in a pulsatile manner to their exterior. This then uniquely acts as a first messenger, triggering aggregation of the starving amoebae followed by their developmental progression towards multicellular fruiting bodies formation. Such developmental signalling for extracellularly-acting cAMP is well studied in the popular dictyostelid, Dictyostelium discoideum, and is mediated by a distinct family ('class E') of G protein-coupled receptors (GPCRs) collectively designated as the cAMP receptors (cARs). Whilst the biochemical aspects of these receptors are well characterised, little is known about their overall 3D architecture and structural basis for cAMP recognition and subtype-dependent changes in binding affinity. Using a ligand docking-guided homology modelling approach, we hereby present for the first time, plausible models of active forms of the cARs from D. discoideum. Our models highlight some structural features that may underlie the differential affinities of cAR isoforms for cAMP binding and also suggest few residues that may play important roles for the activation mechanism of this GPCR family.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dictyostelium; Docking; G protein-coupled receptors; Homology modelling; Slime mold; cAMP

Mesh:

Substances:

Year:  2020        PMID: 32659633     DOI: 10.1016/j.jmgm.2020.107662

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  2 in total

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Authors:  Teresa L Augustin; Roxanna Hajbabaie; Matthew T Harper; Taufiq Rahman
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2.  Establishing an Analogue Based In Silico Pipeline in the Pursuit of Novel Inhibitory Scaffolds against the SARS Coronavirus 2 Papain-Like Protease.

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  2 in total

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