Literature DB >> 32652309

Bayer's in silico ADMET platform: a journey of machine learning over the past two decades.

Andreas H Göller1, Lara Kuhnke2, Floriane Montanari3, Anne Bonin1, Sebastian Schneckener4, Antonius Ter Laak2, Jörg Wichard5, Mario Lobell1, Alexander Hillisch6.   

Abstract

Over the past two decades, an in silico absorption, distribution, metabolism, and excretion (ADMET) platform has been created at Bayer Pharma with the goal to generate models for a variety of pharmacokinetic and physicochemical endpoints in early drug discovery. These tools are accessible to all scientists within the company and can be a useful in assisting with the selection and design of novel leads, as well as the process of lead optimization. Here. we discuss the development of machine-learning (ML) approaches with special emphasis on data, descriptors, and algorithms. We show that high company internal data quality and tailored descriptors, as well as a thorough understanding of the experimental endpoints, are essential to the utility of our models. We discuss the recent impact of deep neural networks and show selected application examples.
Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Year:  2020        PMID: 32652309     DOI: 10.1016/j.drudis.2020.07.001

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  9 in total

1.  Impact of Established and Emerging Software Tools on the Metabolite Identification Landscape.

Authors:  Anne Marie E Smith; Kiril Lanevskij; Andrius Sazonovas; Jesse Harris
Journal:  Front Toxicol       Date:  2022-06-21

2.  The Whole Is Bigger than the Sum of Its Parts: Drug Transport in the Context of Two Membranes with Active Efflux.

Authors:  Valentin V Rybenkov; Helen I Zgurskaya; Chhandosee Ganguly; Inga V Leus; Zhen Zhang; Mohammad Moniruzzaman
Journal:  Chem Rev       Date:  2021-02-17       Impact factor: 60.622

Review 3.  Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data.

Authors:  Andreas Bender; Isidro Cortes-Ciriano
Journal:  Drug Discov Today       Date:  2021-01-27       Impact factor: 7.851

4.  Molecular insights on ABL kinase activation using tree-based machine learning models and molecular docking.

Authors:  Philipe Oliveira Fernandes; Diego Magno Martins; Aline de Souza Bozzi; João Paulo A Martins; Adolfo Henrique de Moraes; Vinícius Gonçalves Maltarollo
Journal:  Mol Divers       Date:  2021-06-30       Impact factor: 3.364

Review 5.  Deep Learning in Virtual Screening: Recent Applications and Developments.

Authors:  Talia B Kimber; Yonghui Chen; Andrea Volkamer
Journal:  Int J Mol Sci       Date:  2021-04-23       Impact factor: 5.923

Review 6.  Artificial Intelligence for Autonomous Molecular Design: A Perspective.

Authors:  Rajendra P Joshi; Neeraj Kumar
Journal:  Molecules       Date:  2021-11-09       Impact factor: 4.411

Review 7.  From Data to Knowledge: Systematic Review of Tools for Automatic Analysis of Molecular Dynamics Output.

Authors:  Hanna Baltrukevich; Sabina Podlewska
Journal:  Front Pharmacol       Date:  2022-03-10       Impact factor: 5.810

8.  Hizikia fusiforme functional oil (HFFO) prevents neuroinflammation and memory deficits evoked by lipopolysaccharide/aluminum trichloride in zebrafish.

Authors:  Ying-Ying Nie; Long-Jian Zhou; Yan-Mei Li; Wen-Cong Yang; Ya-Yue Liu; Zhi-You Yang; Xiao-Xiang Ma; Yong-Ping Zhang; Peng-Zhi Hong; Yi Zhang
Journal:  Front Aging Neurosci       Date:  2022-09-09       Impact factor: 5.702

9.  Multitask machine learning models for predicting lipophilicity (logP) in the SAMPL7 challenge.

Authors:  Eelke B Lenselink; Pieter F W Stouten
Journal:  J Comput Aided Mol Des       Date:  2021-07-17       Impact factor: 3.686

  9 in total

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