| Literature DB >> 32650441 |
Ewelina Lulińska1, Andrea Gibbon2, Mariusz Kaczmarczyk1, Agnieszka Maciejewska-Skrendo1,3, Krzysztof Ficek4,5, Agata Leońska-Duniec1, Michał Wilk4, Katarzyna Leźnicka1, Monika Michałowska-Sawczyn1, Kinga Humińska-Lisowska1, Rafał Buryta3, Paweł Cięszczyk1,6, Ewelina Maculewicz6, Wojciech Czarny7, Alison V September2, Marek Sawczuk1,3.
Abstract
BACKGROUND: Sequence variants within the matrix metalloproteinases genes remain plausible biological candidates for further investigation of anterior cruciate ligament (ACL) rupture risk. The aim of the present study was to establish whether variants within the MMP1 (rs1799750, ->G), MMP10 (rs486055, C > T) and MMP12 (rs2276109, T > C) genes were associated with non-contact ACL rupture in a Polish cohort.Entities:
Keywords: ACL rupture; MMP; gene polymorphism; metalloproteinase
Year: 2020 PMID: 32650441 PMCID: PMC7397146 DOI: 10.3390/genes11070766
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Minor allele frequencies (MAF) and Hardy-Weinberg equilibrium probabilities for the investigated variants (state variants) in the control and anterior cruciate ligament rupture groups investigated in the recruited Polish cohort.
| SNP | MAF (%) | ACLR + CON | ACLR | CON |
|---|---|---|---|---|
| allele G (47.7) | 0.562 | 0.507 | 1.0 | |
| allele T (17.6) | 0.616 | 0.461 | 0.826 | |
| allele C (15.9) | 0.591 | 1.0 | 0.582 |
MAF—minor allele frequency; ACLR—anterior cruciate ligament rupture, CON—control.
Association analysis of the MMP1 rs1799750 -/G, MMP10 rs486055 C/T and MMP12 rs2276109 T/C polymorphisms with non-contact anterior cruciate ligament (ACL) rupture.
| Polymorphism | Model | CON | % | ACLR # | % | OR | 95% CI | ||
|---|---|---|---|---|---|---|---|---|---|
| MMP1 rs1799750 | Codominant | ||||||||
| -- | 55 | 27.23 | 59 | 25.99 | 1.00 | 0.922/0.924 | |||
| -G | 102 | 50.50 | 119 | 52.42 | 1.09 | 0.69 | 1.71 | ||
| GG | 45 | 22.28 | 49 | 21.59 | 1.02 | 0.59 | 1.75 | ||
| Dominant | |||||||||
| -- | 55 | 27.23 | 59 | 25.99 | 1.00 | 0.772/0.774 | |||
| -G + GG | 147 | 72.77 | 168 | 74.01 | 1.07 | 0.69 | 1.64 | ||
| Recessive | |||||||||
| -- + -G | 157 | 77.72 | 178 | 78.41 | 1.00 | 0.863/0.865 | |||
| GG | 45 | 22.28 | 49 | 21.59 | 0.96 | 0.61 | 1.52 | ||
| Overdominant | |||||||||
| -- + GG | 100 | 49.50 | 108 | 47.58 | 1.00 | 0.690/0.693 | |||
| -G | 102 | 50.50 | 119 | 52.42 | 1.08 | 0.74 | 1.58 | ||
| MMP10 rs486055 C/T | Codominant | ||||||||
| CC | 131 | 64.85 | 163 | 71.49 | 1.00 | 0.335/0.400 | |||
| CT | 63 | 31.19 | 58 | 25.44 | 0.74 | 0.48 | 1.13 | ||
| TT | 8 | 3.96 | 7 | 3.07 | 0.70 | 0.25 | 1.99 | ||
| Dominant | |||||||||
| CC | 131 | 64.85 | 163 | 71.49 | 1.00 | 0.140/0.177 | |||
| CT + TT | 71 | 35.15 | 65 | 28.51 | 0.74 | 0.49 | 1.11 | ||
| Recessive | |||||||||
| CC + CT | 194 | 96.04 | 221 | 96.93 | 1.00 | 0.616/0.773 | |||
| TT | 8 | 3.96 | 7 | 3.07 | 0.77 | 0.27 | 2.16 | ||
| Overdominant | |||||||||
| CC + TT | 139 | 68.81 | 170 | 74.56 | 1.00 | 0.186/0.201 | |||
| CT | 63 | 31.19 | 58 | 25.44 | 0.75 | 0.49 | 1.15 | ||
| Codominant | |||||||||
| TT | 144 | 71.29 | 158 | 69.30 | 1.00 | 0.678/0.584 | |||
| CT | 55 | 27.23 | 64 | 28.07 | 1.06 | 0.69 | 0.69 | ||
| CC | 3 | 1.49 | 6 | 2.63 | 1.82 | 0.45 | 0.45 | ||
| Dominant | |||||||||
| TT | 144 | 71.29 | 158 | 69.30 | 1.00 | 0.652/0.807 | |||
| CT + CC | 58 | 28.71 | 70 | 30.70 | 1.10 | 0.73 | 0.73 | ||
| Recessive | |||||||||
| TT + CT | 199 | 98.51 | 222 | 97.37 | 1.00 | 0.402/0.300 | |||
| CC | 3 | 1.49 | 6 | 2.63 | 1.79 | 0.44 | 0.44 | ||
| Overdominant | |||||||||
| TT + CC | 147 | 72.77 | 164 | 71.93 | 1.00 | 0.846/0.936 | |||
| CT | 55 | 27.23 | 64 | 28.07 | 1.04 | 0.68 | 0.68 | ||
ACLR—anterior cruciate ligament rupture, CON—control; * p-values/p value adjusted for sex; OR—odds ratio, 95% CI—confidence intervals, # 227 ACLR subjects for MMP1 rs1799750 -/G, 228 ACLR subjects for MMP10 rs486055 C/T and MMP12 rs2276109 T/C.
Association analysis of the MMP1 x MMP10 interaction with non-contact ACL rupture (codominant model).
|
| rs486055 |
| |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | CT | TT | |||||||||||||||
| CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | ||||||
| rs1799750 | -- | 25 | 31 | 1.00 | 24 | 22 | 0.74 | 0.34 | 1.62 | 6 | 6 | 0.81 | 0.23 | 2.81 | 0.884/ | ||
| -G | 65 | 84 | 1.04 | 0.56 | 1.93 | 35 | 34 | 0.78 | 0.39 | 1.59 | 2 | 1 | 0.40 | 0.03 | 4.71 | ||
| GG | 41 | 47 | 0.92 | 0.47 | 1.81 | 4 | 2 | 0.40 | 0.07 | 2.38 | 0 | 0 | NA | NA | NA | ||
ACLR—anterior cruciate ligament rupture group, CON—control group; * p-values/p value adjusted for sex; OR—odds ratio, 95% CI—confidence intervals; NA—not applicable.
Association analysis of the MMP1 x MMP12 interaction with non-contact ACL rupture (codominant model).
|
| rs2276109 |
| |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TT | CT | CC | |||||||||||||||
| CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | ||||||
| rs1799750 | -- | 48 | 51 | 1.00 | NA | NA | 6 | 8 | 1.25 | 0.41 | 3.88 | 1 | 0 | 0.00 | 0.00 | NA | 0.412/ |
| -G | 71 | 84 | 1.11 | 0.67 | 1.85 | 31 | 35 | 1.06 | 0.57 | 1.98 | 0 | 0 | NA | NA | NA | ||
| GG | 25 | 23 | 0.87 | 0.43 | 1.73 | 18 | 20 | 1.05 | 0.49 | 2.21 | 2 | 6 | 2.82 | 0.54 | 14.67 | ||
ACLR—anterior cruciate ligament rupture, CON—control; * p-values/p value adjusted for sex; OR—odds ratio, 95% CI—confidence intervals; NA—not applicable.
Association analysis of the MMP10 x MMP12 interaction with non-contact ACL rupture (codominant model).
|
| rs2276109 |
| |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | |||||||||||||||
| CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | CON | ACLR | OR | 95% CI | ||||||
| rs486055 | CC | 91 | 111 | 1.00 | NA | NA | 38 | 47 | 1.01 | 0.61 | 1.69 | 2 | 5 | 2.05 | 0.39 | 10.81 | 0.586/ |
| CT | 46 | 43 | 0.77 | 0.46 | 1.26 | 16 | 14 | 0.72 | 0.33 | 1.55 | 1 | 1 | 0.82 | 0.05 | 13.29 | ||
| TT | 7 | 4 | 0.47 | 0.13 | 1.65 | 1 | 3 | 2.46 | 0.25 | 24.05 | 0 | 0 | NA | NA | NA | ||
ACLR—anterior cruciate ligament rupture, CON—control; * p-values/p value adjusted for sex; OR—odds ratio, 95% CI—confidence intervals; NA—not applicable.
Haplotype-based association of MMP1, MMP10 and MMP12 polymorphisms (rs1799750, rs486055, rs2276109) with non-contact ACL rupture.
| Haplotype | Frequency (%) | Additive (Score = 2.95, | Dominant (Score = 2.40, | Recessive (Score = 2.30, | |||||
|---|---|---|---|---|---|---|---|---|---|
| ACLR + CON | ACLR | CON | Score | Score | Score | ||||
| [GTT] | 8.55 | 7.24 | 10.37 | -1.29 | 0.197/0.225 | -1.22 | 0.221/0.239 | NA | NA |
| [-TT] | 6.87 | 6.23 | 7.61 | -0.71 | 0.480/0.613 | -0.49 | 0.626/0.648 | -0.89 | 0.372/0.441 |
| [-CC] | 0.60 | 0.53 | 0.68 | -0.21 | 0.836/0.648 | -0.21 | 0.836/0.769 | NA | NA |
| [-TC] | 1.27 | 1.23 | 1.30 | -0.16 | 0.870/0.795 | -0.16 | 0.870/0.795 | NA | NA |
| [-CT] | 17.81 | 17.95 | 17.64 | 0.08 | 0.936/0.979 | -0.06 | 0.949/0.917 | 0.25 | 0.802/0.850 |
| [GTC] | 0.87 | 1.09 | 0.28 | 0.16 | 0.870/0.811 | 0.16 | 0.870/0.887 | NA | NA |
| [GCT] | 50.84 | 51.91 | 49.29 | 0.48 | 0.634/0.638 | 0.22 | 0.824/0.811 | 0.60 | 0.549/0.503 |
| [GCC] | 13.20 | 13.81 | 12.84 | 0.77 | 0.443/0.487 | 0.55 | 0.580/677 | 0.98 | 0.325/0.240 |
ACLR—anterior cruciate ligament rupture, CON—control; NA—not applicable, * p-values/p value adjusted for sex.