Literature DB >> 32648830

An overview of in silico vaccine design against different pathogens and cancer.

Kimia Kardani1,2, Azam Bolhassani2, Ali Namvar3.   

Abstract

INTRODUCTION: Due to overcome the hardness of the vaccine design, computational vaccinology is emerging widely. Prediction of T cell and B cell epitopes, antigen processing analysis, antigenicity analysis, population coverage, conservancy analysis, allergenicity assessment, toxicity prediction, and protein-peptide docking are important steps in the process of designing and developing potent vaccines against various viruses and cancers. In order to perform all of the analyses, several bioinformatics tools and online web servers have been developed. Scientists must take the decision to apply more suitable and precise servers for each part based on their accuracy. AREAS COVERED: In this review, a wide-range list of different bioinformatics tools and online web servers has been provided. Moreover, some studies were proposed to show the importance of various bioinformatics tools for predicting and developing efficient vaccines against different pathogens including viruses, bacteria, parasites, and fungi as well as cancer. EXPERT OPINION: Immunoinformatics is the best way to find potential vaccine candidates against different pathogens. Thus, the selection of the most accurate tools is necessary to predict and develop potent preventive and therapeutic vaccines. To further evaluation of the computational and in silico vaccine design, in vitro/in vivo analyses are required to develop vaccine candidates.

Entities:  

Keywords:  B cell; Computational vaccinology; T cell; bioinformatics tools; epitope prediction tools

Mesh:

Substances:

Year:  2020        PMID: 32648830     DOI: 10.1080/14760584.2020.1794832

Source DB:  PubMed          Journal:  Expert Rev Vaccines        ISSN: 1476-0584            Impact factor:   5.217


  12 in total

1.  A candidate triple-negative breast cancer vaccine design by targeting clinically relevant cell surface markers: an integrated immuno and bio-informatics approach.

Authors:  Shashank Kumar; Mohd Shuaib; Kumari Sunita Prajapati; Atul Kumar Singh; Princy Choudhary; Sangeeta Singh; Sanjay Gupta
Journal:  3 Biotech       Date:  2022-02-20       Impact factor: 2.406

2.  Immunoinformatic Approaches for Vaccine Designing for Pathogens with Unclear Pathogenesis.

Authors:  Naina Arora; Anand K Keshri; Rimanpreet Kaur; Suraj Singh Rawat; Amit Prasad
Journal:  Methods Mol Biol       Date:  2022

3.  In silico Analysis of Peptide-Based Biomarkers for the Diagnosis and Prevention of Latent Tuberculosis Infection.

Authors:  Peng Cheng; Liang Wang; Wenping Gong
Journal:  Front Microbiol       Date:  2022-06-28       Impact factor: 6.064

4.  Vaccinomics to Design a Multi-Epitopes Vaccine for Acinetobacter baumannii.

Authors:  Miraj Ud-Din; Aqel Albutti; Asad Ullah; Saba Ismail; Sajjad Ahmad; Anam Naz; Muhammad Khurram; Mahboob Ul Haq; Zobia Afsheen; Youness El Bakri; Muhammad Salman; Bilal Shaker; Muhammad Tahir Ul Qamar
Journal:  Int J Environ Res Public Health       Date:  2022-05-04       Impact factor: 4.614

5.  In silico designed Staphylococcus aureus B-cell multi-epitope vaccine did not elicit antibodies against target antigens suggesting multi-domain approach.

Authors:  Nimat Ullah; Farha Anwer; Zaara Ishaq; Abubakar Siddique; Majid Ali Shah; Moazur Rahman; Abdur Rahman; Xinrui Mao; TingTing Jiang; Bok Luel Lee; Taeok Bae; Amjad Ali
Journal:  J Immunol Methods       Date:  2022-03-25       Impact factor: 2.287

6.  In silico design and in vitro expression of novel multiepitope DNA constructs based on HIV-1 proteins and Hsp70 T-cell epitopes.

Authors:  Elahe Akbari; Kimia Kardani; Ali Namvar; Soheila Ajdary; Esmat Mirabzadeh Ardakani; Vahid Khalaj; Azam Bolhassani
Journal:  Biotechnol Lett       Date:  2021-05-13       Impact factor: 2.461

7.  Anticipation of Antigenic Sites for the Goal of Vaccine Designing Against Nipah Virus: An Immunoinformatics Inquisitive Quest.

Authors:  Suraj Kumar Sharma; Shivani Srivastava; Ajay Kumar; Vivek Srivastava
Journal:  Int J Pept Res Ther       Date:  2021-05-11       Impact factor: 1.931

8.  In Silico Designing of a Multitope Vaccine against Rhizopus microsporus with Potential Activity against Other Mucormycosis Causing Fungi.

Authors:  Mohamed A Soltan; Muhammad Alaa Eldeen; Nada Elbassiouny; Hasnaa L Kamel; Kareem M Abdelraheem; Hanaa Abd El-Gayyed; Ahmed M Gouda; Mohammed F Sheha; Eman Fayad; Ola A Abu Ali; Khalid Abd El Ghany; Dalia A El-Damasy; Khaled M Darwish; Sameh S Elhady; Ashraf E Sileem
Journal:  Cells       Date:  2021-11-04       Impact factor: 6.600

Review 9.  Development of synthetic antigen vaccines for COVID-19.

Authors:  Maria da Conceição Viana Invenção; Alanne Rayssa da Silva Melo; Larissa Silva de Macêdo; Thaís Souto Paula da Costa Neves; Cristiane Moutinho Lagos de Melo; Marcelo Nazário Cordeiro; Marcus Vinicius de Aragão Batista; Antonio Carlos de Freitas
Journal:  Hum Vaccin Immunother       Date:  2021-10-06       Impact factor: 3.452

10.  Toxoplasma gondii Tyrosine-Rich Oocyst Wall Protein: A Closer Look through an In Silico Prism.

Authors:  Ali Asghari; Hamidreza Majidiani; Taher Nemati; Mohammad Fatollahzadeh; Morteza Shams; Razi Naserifar; Bahareh Kordi
Journal:  Biomed Res Int       Date:  2021-10-14       Impact factor: 3.411

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