| Literature DB >> 32647666 |
Bin Liang1, Menglan Li1,2, Qianyun Deng3, Chen Wang1, Jialing Rong1, Siying He1, Yang Xiang1, Fang Zheng1.
Abstract
BACKGROUND: Circular RNAs (circRNAs) have been reported to aberrantly express in coronary artery disease (CAD). Due to their special structures, circRNAs have the potential to be specific and stable markers. We conducted this study to explore circZNF609's function in atherosclerosis and to evaluate its predictive values for CAD.Entities:
Keywords: Circular RNAs (circRNAs); biomarker; circZNF609; coronary artery disease (CAD); receiver operating characteristic curve (ROC curve)
Year: 2020 PMID: 32647666 PMCID: PMC7333115 DOI: 10.21037/atm-19-4728
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Clinical characteristics of the studied subjects
| Characteristics | Discovery cohort | Validation cohort | Combined cohort | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CAD (n=30) | Control (n=30) | P | CAD (n=300) | Control (n=179) | P | CAD (n=330) | Control (n=209) | P | |||
| Male, n (%) | 29 (98.7) | 27 (90.0) | 0.605c | 208 (69.3) | 123 (68.7) | 0.887c | 237 (71.8) | 150 (71.8) | 0.990c | ||
| Age, years | 58.2±3.4 | 57.8±4.0 | 0.089a | 61.3±11.3 | 62.5±9.9 | 0.025a | 60.9±10.9 | 61.9±9.4 | 0.308a | ||
| BMI, kg/m2 | 24.5±2.9 | 24.2±2.1 | 0.620a | 25.1±3.4 | 24.3±1.9 | <0.0001a | 25.1±3.6 | 24.3±1.9 | 0.006a | ||
| Smoking, n (%) | 24 (80.0) | 16 (53.3) | 0.028c | 165 (55.0) | 43 (24.0) | <0.0001c | 189 (57.3) | 59 (28.2) | <0.0001c | ||
| Alcoholism, n (%) | 9 (30.0) | 6 (20.0) | 0.371c | 74 (24.7) | 28 (15.6) | 0.020c | 83 (25.2) | 34 (16.3) | 0.015c | ||
| Hypertension, n (%) | 14 (46.7) | 9 (30.0) | 0.184c | 191 (63.7) | 57 (31.8) | <0.0001c | 206 (62.4) | 66 (31.6) | <0.0001c | ||
| Hyperlipidemia, n (%) | 7 (23.3) | 5 (16.7) | 0.519c | 62 (20.7) | 20 (11.2) | 0.008c | 68 (20.6) | 25 (12.0) | 0.010c | ||
| T2DM, n (%) | 8 (26.7) | 6 (20.0) | 0.542c | 85 (28.3) | 26 (14.5) | 0.001c | 92 (27.9) | 32 (15.3) | 0.001c | ||
| FPG, mmol/L | 7.14 (5.99, 9.16) | 5.44±0.39 | <0.0001b | 6.32 (5.39, 8.85) | 5.19±0.57 | <0.0001b | 6.39 (5.42, 8.86) | 5.24 (4.98, 5.57) | <0.0001b | ||
| TC, mmol/L | 4.08±1.11 | 4.42±0.46 | 0.001a | 4.13 (3.37, 4.74) | 4.36±0.53 | <0.0001b | 4.12 (3.37, 4.74) | 4.49 (4.01, 4.80) | <0.0001b | ||
| TG, mmol/L | 1.75 (1.02, 2.25) | 1.04±0.37 | 0.005b | 1.46 (1.07, 2.16) | 1.13±0.30 | <0.0001b | 1.47 (1.07, 1.18) | 1.13 (0.85, 1.39) | <0.0001b | ||
| HDL-C, mmol/L | 0.97±0.28 | 1.58±0.34 | <0.0001a | 1.00 (0.86, 1.19) | 1.53±0.33 | <0.0001b | 0.99 (0.85, 1.18) | 1.47 (1.28, 1.75) | <0.0001b | ||
| LDL-C, mmol/L | 2.41±0.79 | 2.75±0.41 | 0.010a | 2.40 (1.86, 2.88) | 2.70±0.51 | <0.0001b | 2.40 (1.86, 2.87) | 2.78 (2.42, 3.09) | <0.0001b | ||
| WBC, 109/L | 8.97±2.99 | 6.52±1.86 | <0.0001a | 7.46 (5.83, 9.57) | 6.14±1.54 | <0.0001b | 7.63 (5.98, 9.88) | 6.1 (5.11, 7.00) | <0.0001b | ||
| NEU, 109/L | 6.43±3.19 | 3.75±1.58 | <0.0001a | 5.14 (3.80, 8.20) | 3.46±1.16 | <0.0001b | 5.01 (3.72, 7.38) | 3.35 (2.63, 4.00) | <0.0001b | ||
| LYM, 109/L | 1.75±0.62 | 2.10±0.75 | 0.054a | 1.53 (1.17, 2.17) | 2.01±0.62 | <0.0001b | 1.50 (1.14, 2.01) | 1.99 (1.55, 2.42) | <0.0001b | ||
| MON, 109/L | 0.64±0.27 | 0.49±0.18 | 0.015a | 0.52 (0.42, 0.70) | 0.46±0.14 | 0.001b | 0.52 (0.42, 0.67) | 0.46 (0.36, 0.59) | <0.0001b | ||
| PLT, 109/L | 230±90 | 185±40 | 0.043a | 199 (156, 233) | 182±50 | 0.040b | 191.60 (158.3, 234.2) | 177 (149, 220) | 0.003b | ||
| CRP, mg/L | 4.22 (1.06, 12.50) | – | – | 2.74 (0.95, 7.75) | – | – | 2.98 (0.98, 8.33) | – | – | ||
| NT-proBNP, pg/mL | 372 (147, 565) | – | – | 371 (105, 1,107) | – | – | 372.3 (107.25, 1,070.5) | – | – | ||
| cTnT, ng/mL | 3.47 (0.26, 20.96) | – | – | 0.91 (0.012, 11.88) | – | – | 1.00 (0.031, 13.00) | – | – | ||
| Gensini scores | 48.0 (38.4, 79.5) | – | – | 44.5 (22, 73.4) | – | – | 45.25 (22.75, 74.625) | – | – | ||
| LVEF, % | 63 (60.75, 63.25) | – | – | 63 (60, 64) | – | – | 63 (60, 64) | – | – | ||
| History of stains use, n (%) | 14 (46.7) | – | – | 147 (52.3) | – | – | 161 (51.8) | – | – | ||
| Last cardiovascular event time, day | 2 (1, 2) | – | – | 1 (1, 2) | – | – | 1 (1, 2) | – | – | ||
For continuous variables, normally distributed data were expressed as mean ± standard deviation (SD), while skewed data were described as median (interquartile range). For categorical, data were expressed as frequency counts. a, Student’s t test; b, Mann-Whitney U test; c, χ2 test. CAD, coronary artery disease; BMI, body mass index; T2DM, type 2 diabetes mellitus; FPG, fasting plasma glucose; TC, total cholesterol; TG, triglyceride; HDL-c, high-density lipoprotein cholesterol; LDL-c, low-density lipoprotein cholesterol; WBC, white blood cell counts; NEU, neutrophil counts; LYM, lymphocyte counts; MON, monocyte counts; PLT, platelet counts; CRP, c-reaction protein; NT-proBNP, N-terminal pro-brain natriuretic peptide; cTnT, cardiac troponin T; LVEF, left ventricular ejection fraction.
Clinical characteristics of the subgroups
| Characteristics | SAP (n=58) | UA (n=67) | NSTEMI (n=103) | STEMI (n=102) |
|---|---|---|---|---|
| Male, n (%) | 37 (63.8) | 42 (62.7) | 78 (75.7) | 80 (78.4) |
| Age, years | 64.12±10.08 | 62.66±9.32 | 59.58±10.43 | 59.36±12.26 |
| BMI, kg/m2 | 25.3±3.93 | 25.35±3.58 | 25.16±3.1 | 24.7±3.08 |
| Smoking, n (%) | 23 (39.7) | 29 (43.3) | 64 (62.1) | 73 (71.6) |
| Alcoholism, n (%) | 23 (39.7) | 26 (38.8) | 16 (15.5) | 18 (17.6) |
| Hypertension, n (%) | 39 (67.2) | 46 (68.7) | 67 (65) | 54 (52.9) |
| Hyperlipidemia, n (%) | 17 (29.3) | 13 (19.4) | 16 (15.5) | 22 (21.6) |
| T2DM, n (%) | 23 (39.7) | 22 (32.8) | 27 (26.2) | 20 (19.6) |
| FPG, mmol/L | 5.64 (5.105, 6.885) | 5.73 (5, 6.99) | 6.54 (5.54, 9.63) | 7.72 (6.03, 10.22) |
| TC, mmol/L | 4.13±0.95 | 3.86±0.97 | 4.23±1.3 | 4.32±1.1 |
| TG, mmol/L | 1.46 (1.07, 2.53) | 1.51 (1.04, 2.2) | 1.52 (1.06, 2.17) | 1.37 (1.1, 2.05) |
| HDL-C, mmol/L | 1.09±0.34 | 0.99±0.21 | 1.01±0.26 | 1.05±0.27 |
| LDL-C, mmol/L | 2.45±0.72 | 2.21±0.64 | 2.51±0.95 | 2.57±0.79 |
| WBC, 109/L | 6.53±2.44 | 6.61±1.72 | 8.22±2.63 | 10.45±3.64 |
| NEU, 109/L | 4.05±2.51 | 4.32±1.46 | 5.76±2.45 | 8.18±3.59 |
| LYM, 109/L | 1.85±0.73 | 1.62±0.58 | 1.71±0.65 | 1.53±0.79 |
| MON, 109/L | 0.48±0.16 | 0.48±0.15 | 0.61±0.24 | 0.62±0.3 |
| PLT, 109/L | 188.68±53.76 | 188.21±59.38 | 217.64±78 | 202.22±68.48 |
| CRP, mg/L | 0.96 (0.595, 2.965) | 2.12 (0.76, 4.76) | 3.17 (1.25, 8.25) | 3.86 (1.31, 12.09) |
| NT-proBNP, pg/mL | 70.26 (37.78, 304.3) | 126.9 (51.97, 363.55) | 593.2 (171.45, 1,378.5) | 549.55 (192, 1,702.75) |
| cTnT, ng/mL | 0.0045 (0.002, 0.0178) | 0.0075 (0.004, 0.028) | 1.24 (0.24, 4.76) | 22.05 (4.47, 41.78) |
| Gensini score | 3.355 (2.69, 4.4415) | 30 (15, 62) | 59 (42.5, 85.25) | 46.5 (36.5, 80.5) |
| LVEF, % | 63.07 (62, 65) | 62.87 (61, 65) | 61.17 (59, 63) | 61.28 (60, 63) |
| History of stains use, n (%) | 32 (55.2) | 34 (50.7) | 47 (45.6) | 56 (54.9) |
| Last cardiovascular event time, day | – | 1 (1, 2) | 1 (1, 2) | 1 (1, 2) |
For continuous variables, normally distributed data were expressed as mean ± standard deviation (SD), while skewed data were described as median (interquartile range). For categorical, data were expressed as frequency counts. SAP, stable angina pectoris; UA, unstable angina pectoris; NSTEMI, non-ST-segment elevation myocardial infarction; STEMI, ST-segment elevation myocardial infarction; BMI, body mass index; T2DM, type 2 diabetes mellitus; FPG, fasting plasma glucose; TC, total cholesterol; TG, triglyceride; HDL-C, high-density lipoprotein cholesterol; LDL-C, low-density lipoprotein cholesterol; WBC, white blood cell count; NEU, neutrophil count; LYM, lymphocyte count; MON, monocyte count; PLT, platelet count; CRP, c-reaction protein; NT-proBNP, N-terminal pro-brain natriuretic peptide; cTnT, cardiac troponin T; LVEF, left ventricular ejection fraction.
RT-PCR primer sequences
| Primer | Sequences |
|---|---|
| circZNF609 for human | |
| Forward | 5'-TTGGGAACTAAACCGGAGCC-3' |
| Reverse | 5'-TCAGACCTGCCACATTGGTC-3' |
| GAPDH for human | |
| Forward | 5'-TGTTGCCATCAATGACCCCTT-3' |
| Reverse | 5'-CTCCACGACGTACTCAGCG-3' |
| IL-6 for mouse | |
| Forward | 5'-TACCACTTCACAAGTCGGAGGC-3' |
| Reverse | 5'-CTGCAAGTGCATCATCGTTGTTC-3' |
| TNF-α for mouse | |
| Forward | 5'-GGTGCCTATGTCTCAGCCTCTT-3' |
| Reverse | 5'-GCCATAGAACTGATGAGAGGGAG-3' |
| IL-10 for mouse | |
| Forward | 5'-GCCCTTTGCTATGGTGTCCT-3' |
| Reverse | 5'-TAGGGGAACCCTCTGAGCTG-3' |
| circZNF609 for mouse | |
| Forward | 5'-TTGGGAACTAAACCGGAGCC-3' |
| Reverse | 5'-TCAGACCTGCCACATTGGTC-3' |
| GAPDH for mouse | |
| Forward | 5'-TGTGTCCGTCGTGGATCTGA-3' |
| Reverse | 5'-TTGCTGTTGAAGTCGCAGGAG-3' |
The RT-PCR reactions started at 95 °C for 5 min, followed by 38 cycles of 95 °C for 30 sec, 60 °C for 30 sec and 72 °C for 30 sec. RT-PCR, real time polymerase chain reaction.
Figure S1circZNF609 in PBLs could be amplified by RT-PCR specifically. The sequence of circZNF609 by Sanger sequencing (lower part) was consistent with that from circBase (upper part). PBL, peripheral blood leukocyte; RT-PCR, real time polymerase chain reaction.
Figure 1The expression level of circZNF609 in CAD patients was significantly decreased compared with controls. (A) In the discovery cohort; (B) in the validation cohort; (C) in the combined cohort. Error bars represent the median with interquartile range. The data analyzed using Mann-Whitney test. ****, P<0.0001. CAD, coronary artery disease.
Figure S2circZNF609 expression levels between: (A) non-T2DM controls and non-T2DM CAD patients, (B) CAD patients with and without T2DM. ****, P<0.0001. CAD, coronary artery disease; T2DM, type 2 diabetes mellitus.
Univariate and multivariate logistic regression analysis to identify circZNF609 as an independent predictor of CAD
| Variable | circZNF609 | ||
|---|---|---|---|
| Top tertile | Middle tertile | P value | |
| Univariate analysis | 0.056 (0.270, 0.114) | 0.122 (0.061, 0.246) | <0.0001 |
| Multivariate logistic regression model 1 | 0.044 (0.021, 0.093) | 0.111 (0.055, 0.228) | <0.0001 |
| Multivariate logistic regression model 2 | 0.041 (0.019, 0.087) | 0.104 (0.050, 0.218) | <0.0001 |
| Multivariate logistic regression model 3 | 0.046 (0.021, 0.099) | 0.122 (0.058, 0.258) | <0.0001 |
| Multivariate logistic regression model 4 | 0.038 (0.017, 0.085) | 0.104 (0.048, 0.223) | <0.0001 |
| Multivariate logistic regression model 5 | 0.069 (0.029, 0.167) | 0.126 (0.054, 0.295) | <0.0001 |
Data are odds ratio (95% CI). Model 1 included age, gender, BMI. Model 2 included age, gender, BMI, smoking, alcoholism. Model 3 included age, gender, BMI, smoking, alcoholism, histories of hypertension, hyperlipidemia, T2DM. Model 4 included age, gender, BMI, smoking, alcoholism, histories of hypertension, hyperlipidemia, T2DM, history of statins use. Model 5 included age, gender, BMI, smoking, alcoholism, histories of hypertension, hyperlipidemia, T2DM, history of statins use, PBLs counts and PBLs classification. CAD, coronary artery disease; BMI, body mass index; T2DM, type 2 diabetes mellitus; PBLs, peripheral blood leucocytes.
Association between circZNF609 expression levels and clinical parameters in CAD patients
| Clinical characteristics | circZNF609 expression | ||||
|---|---|---|---|---|---|
| Spearman correlation | Multiple linear regression | ||||
| r | P | β | P | ||
| Sex | −0.012 | 0.833 | – | – | |
| Age | −0.094 | 0.089 | – | – | |
| BMI | 0.107 | 0.068 | – | – | |
| Smoking | 0.076 | 0.166 | – | – | |
| Alcoholism | −0.018 | 0.750 | – | – | |
| Hypertension | −0.023 | 0.678 | – | – | |
| Hyperlipidemia | 0.136 | 0.013* | – | – | |
| T2DM | −0.048 | 0.386 | – | – | |
| WBC | −0.092 | 0.104 | – | – | |
| NEU | −0.142 | 0.012* | – | – | |
| LYM | 0.237 | <0.0001* | 0.16 | 0.01* | |
| MON | −0.02 | 0.727 | – | – | |
| PLT | 0.001 | 0.987 | – | – | |
| CRP | −0.137 | 0.025* | −0.138 | 0.026* | |
| NT-proBNP | −0.050 | 0.402 | – | – | |
| cTnT | 0.051 | 0.378 | – | – | |
| Gensini scores | −0.153 | 0.006* | – | – | |
*, P<0.05. CAD, coronary artery disease; BMI, body mass index; T2DM, type 2 diabetes mellitus; WBC, white blood cell counts; NEU, neutrophil counts; LYM, lymphocyte counts; MON, monocyte counts; PLT, platelet counts; CRP, c-reaction protein; NT-proBNP, N-terminal pro-brain natriuretic peptide; cTnT, cardiac troponin T.
Figure S3The correlation between circZNF609 expression level and (A) monocyte-to-lymphocyte ratio, (B) neutrophil-to-lymphocyte ratio and (C) platelet-to-lymphocyte ratio.
Figure 2The ROC curve of circZNF609. (A) In the discovery cohort; (B) in the validation cohort; (C) in the combined cohort. Error bars represent the median with interquartile range. ROC, receiver operating characteristic; AUC, area under the curve; CAD, coronary artery disease; Sp, specificity; Se, sensibility.
Figure 3The expression level and ROC curves of circZNF609 in subgroups. (A) The expressions of circZNF609 in SAP (n=58), UA (n=67), NSTEMI (n=103) and STEMI (n=102) subtypes were significantly lower than that in controls respectively. (B) The blue, red, yellow, green ROC curves of circZNF609 were calculated to discriminate SAP, UA, NSTEMI, STEMI from controls respectively. The data analyzed using Mann-Whitney test. ****, P<0.0001. SAP, stable angina pectoris; UA, unstable angina pectoris; NSTEMI, non-ST-segment elevation myocardial infarction; STEMI, ST-segment elevation myocardial infarction; ROC, receiver operating characteristic; AUC, area under the curve; CI, confidence interval.
ROC analysis of circZNF609 for distinguishing different subgroups of CAD from controls
| Subgroups | AUC (95% CI) | Specificity (95% CI) | Sensitivity (95% CI) | P value |
|---|---|---|---|---|
| SAP | 0.705 (0.624–0.787) | 0.715 (0.645–0.776) | 0.621 (0.492–0.734) | <0.0001 |
| UA | 0.807 (0.740–0.873) | 0.788 (0.721–0.845) | 0.716 (0.593–0.820) | <0.0001 |
| NSTEMI | 0.713 (0.648–0.778) | 0.777 (0.708–0.835) | 0.602 (0.501–0.697) | <0.0001 |
| STEMI | 0.752 (0.691–0.813) | 0.799 (0.733–0.855) | 0.618 (0.516–0.712) | <0.0001 |
ROC, receiver operating characteristic; CAD, coronary artery disease; SAP, stable angina pectoris; UA, unstable angina pectoris; NSTEMI, non-ST-segment elevation myocardial infarction; STEMI, ST-segment elevation myocardial infarction; AUC, the area under the curve; CI, confidence interval.
Figure 4Overexpression of circZNF609 attenuated inflammation. (A) The expression level of circZNF609 was significantly elevated in pcDNA3.1-circZNF609. (B) The expression level of IL-10 was significantly increased in pcDNA3.1-circZNF609. (C) The expression level of TNF-α was significantly decreased in pcDNA3.1-circZNF609. (D) The expression level of IL-6 was significantly decreased in pcDNA3.1-circZNF609. Data were listed as mean ± SD of at least three independent experiments. **, P<0.01; ***, P<0.001.
Figure S4The KEGG pathway enrichment analysis results of circZNF609 related miRNAs predicted by TargetScan. KEGG, Kyoto Encyclopedia of Genes and Genomes.
The four miRNA targets predicted by MiRWalk database
| hsa-miR-615-5p |
| IGF2, HSD11B1L, COMMD5, TBC1D25, UBE2S, SDF4, ZNF426, MAP3K9, IP6K1, G3BP1, KCNH1, GZMM, NFIC, IFNAR1, GJB7, AGTPBP1, PPIC, CCDC71L, RAP1GAP2, KDM6B, ZNF488, NMNAT1, FBLIM1, RPH3AL, WWC2, NUPL2, BHLHA15, SLC22A12, SH3PXD2A, HIST3H2BB, MYO9B, RAB11B, FLYWCH1, SPRED3, VDR, RAB24, ARC, C8orf58, CDKN1A, CDS2, CENPO, ELFN2, MEF2D, MIDN, MSN, NLGN2, NTSR1, RNF40, SNCG, ZBTB7B, ZC3H7B, FIBCD1, NFIX, RNF24, AKR7A2, APOL6 |
| hsa-miR-145-5p |
| BNIP3, ERBB4, CCDC43, AKR1B10, KLF5, SP1, MMP1, C11orf65, SOX2, TNFSF13, PTP4A2, HLTF, KLF4, CDK6, TMEM9B, GMFB, MUC1, ZFYVE9, MMP12, SERINC5, MYO6, NUFIP2, MTMR14, ALPPL2, CDKN1A, DDX6, NDUFA4, NDRG2, STAT1, HIST1H2AH, FAM3C, DTD1, YES1, ARF6, LYPLA2, TPM3, CBFB, PLAGL2, FAM45A, MAP2K6, PPP3CA, NR1D2, PIGF, CEP19, CLINT1, ADD3, AP1G1, TPRG1, IRS1, PADI1, JADE1, GOLM1, PARP8, PHACTR2, NIPSNAP1, MAP3K11, TMOD3, SNX24, KREMEN1, PLEKHM1, EGFR, KIF21A, MMP14, AGTRAP, MAP3K3, SAMD5, ABRACL, TNR, FSCN1, CRYBG1, MIXL1, SLC22A9, MYC, HMGA2, TSPAN6, RRAGC, FLI1, DDC, PODXL, WSB1, DFFA, ANGPT2, ABHD17C, RAB3IP, IFNB1, ROCK1, NANOG, ZNF445, TIRAP, RPS6KB1, MYO5A, PANK1, POU5F1, CD28, EPAS1, AQR, IGF1R, NFATC1, ETS1, SMIM17, KRT7, SP7, RREB1, NDUFS2, PPM1D, CFTR, CD44, MUC4, MYRF, CSRNP3, BRAF, ZNF660, CPEB4, ZNF426, ACTB, WASHC2C, FZD7, UBR7, SMAD3, DDI2, ROBO2, SNTB1, SMAD5, NAIP, SRGAP1, SESN2, TGFBR2, SET, EIF4E, REL, SMAD4, RPA1, CDK4, PSAT1, MAP2K4, MCM2, VEGFA, FZD6, CTNND1, SPTLC1, SERPINE1, VGLL4, P4HA1, MYOCD, IRS2, IVNS1ABP, MAP4K2, MTDH, ITGB8, SLC16A10, UNC5D, CAMK1D, SWAP70, RPS6KA3, THSD7A, FXN, ESR1, DEK, SLC26A2, PXN, NUDT1, PRDM2, ORC4, MSH3, JAG1, ZNF772, HBEGF, CD40, NEDD9, CYP2C19, BCLAF3, TGFB2, DDX17, ZNF100, CTNNBIP1, SMAD2, ERG, CCDC80, CLSTN2, SLC16A5, NRAS, BTG1, ZNF451, PNMA3, ILK, ANKRD28, ZBTB25, CRAMP1, CTGF, ZFAND3, CCDC85C, SPTBN1, SOCS7, UBXN2A, ABCC1, SENP1, MDM2, NUP43, TGFBI, RTKN, ADAM17, LMNB2, RBM18, F11R, CDH2, UTP15, DUSP6, ARL6IP5, HDAC2, IGFBP5, ODR4, ALG9 |
| hsa-miR-138-5p |
| ARHGEF3, ZNF607, ROCK2, CST9, RHOC, TSTD2, SLC45A3, IL10RA, TERT, MEX3A, EID1, SEMA4C, PPARG, FERMT2, LPL, FEM1B, IGF1R, C12orf49, GNAI2, PFN2, FOSL1, LNPEP, SIRT1, DEK, CCND3, TP53INP2, PTK2, ARL5B, H2AFX, C7orf33, HIF1A, PLEKHG4B, CASP3, MYO3A, BLCAP, LIN52, MXD1, BAG4, RELN, FAM35A, EZH2, UBE2V1, SOX4, IGLON5, MMP3, GRID1, CDH2, PPM1D, PLEK2, FUT11, CDH1, PPM1L, EED, CAPN7, SUZ12, ZNF426, ZEB2, PLAGL2, VIM, NR3C1, PHKG2, MEAF6, RARA, KCNK12, RGS12, NEUROD1, TOR2A, FOXC1, AGO1, BCL11A, NVL, CD274, DMKN, NFKB1, HIST1H2BK, AKT1, HIST1H2BJ, SOX9, S100A1, KDM5C, CCND1, YAP1, SENP1, BAG1, ADGRA2, CASTOR2, RMND5A, CCAR2, IGF2BP1, CELF1, CBY1, FGF19, HMGA1, HNRNPUL1, ZMYND11, MAP2K7, DNAJB6, NACC1, EIF4EBP1, NPLOC4, ARHGAP42, PLEKHM1, TWIST2, POLR2E, MAP3K11, VASH1, LCN2, MYBL2, C16orf87, RPA1, TRAM1, YPEL4, CSRP2, ACTR1A, ARHGAP31, FAM109A |
| hsa-miR-150-5p |
| MYB, C3orf36, RAB13, DSTYK, ZNF426, PIGR, EGR2, TRAF3IP2, CBX5, DHTKD1, TNIP3, ZNF454, VEGFA, TNFAIP8L1, SUGT1, CNNM2, WWC1, EXO5, IGF2, WDR97, HIP1, CDK2, VPS53, TSPAN11, MUC4, PLXDC1, SENP8, BCL11B, USP15, PIAS2, ZEB1, ABHD15, SLC25A44, MLN, TRIOBP, GATAD2B, NOTCH3, GPR182, KLHL7, SAR1A, SLC7A11, LRRC15, FLT3, TXK, ARSE, PAK3, SGTB, PXMP4, EP300, FHDC1, TTC31, TRPV2, ISCA2, ATP9A, ATP13A3, SKIDA1, YPEL1, DNASE2, HOOK3, ACOX1, TP53, PHF12, FAXC, MSANTD3, CAPZA2, DPYSL5, BIRC5, FAM89A, CALCOCO2, COL9A2, MBD1, CAMK4, SRCIN1, MASTL, TBC1D16, ABHD2, IRAK4, PRKAB1, CBL, ZNF514, IP6K2, NPHP1, ZNF578, RAPGEF6, ADIPOR2, CAVIN1, C8orf46, CYTIP, ACOT9, CARHSP1, ATP2B1, MED16, ZNF207, LIPG, NOL9, BDP1, PURB, PDZD8, ULK2, SPPL3, RFK, TEAD1, ZBTB7A, FRAT2, ZNF573, MFSD2A, LY6G5B, ZHX3, CNPPD1, BBS5, C16orf58, WNT7B, PARD3, TMEM174, HILPDA, ASB16, APOPT1, TIMM50, SYNPO2L, NEK8, SYNPO2, PPP2CB, SMIM7, ALDOA, RBM41, ATAD2B, TRPS1, HMGB1, SPAG16, SLC25A37, LGSN, CREB1, FOPNL, GOSR1, ELOB, PLEKHM3, PRIM1, STAT5B, COL4A4, BTN3A2, WWC2, GJD3, KIAA0930, STAT1, SP1, MYH9, SEC14L4, LRRC27, STX4, NANOG, CISH, PTCHD1, TLDC1, CXorf38, ANKS4B, PRKCA, WDR77, MMAB, PPIE, S1PR3, MAN2B2, MMP14, MRPS27, KLHL21, ASB8, MFSD11, EIF2B2, ARRB2, GAN, PIGM, ZNF582, C15orf40, GNB5, SLC2A1, AGTPBP1, RRP1B, ZNF626, HSPA4L, UBOX5, DDOST, DGCR6L, RANGAP1, ZNF551, PRPF38A, ZYG11A, PHLDA1, XPR1, FAM185A, LNPK, GRM6, ZMAT3, RAB3IP, ABHD18, WDR53, LTBP2, SPIC, TMEM127, STK11, TEP1, TNFSF15, PSMC1, CCS, SPEM1, CDC14B, SMUG1, ATCAY, FKBP9, PDCD4, SLC6A4, CENPM, PPM1A, PGBD4, CTNS, SRCAP, SLC35F5, DPP9, BMP8B, ZNF682, ZNF699, XPOT, SH3BP5, GJC1, TUBB4A, CAMK1D, TTYH3, MANEAL, RPL14, GPBP1, SERF2, SLC35G1, TNS4, NMNAT1, RNF19B, ISY1, IPP, TIAL1, TMOD3, HIF1AN, PTPN4, KIF3A, A1CF, CORO2A, TMOD2, SNX2, ORAI2, KPNA6, BCAS4, MYO1F, TMEM92, RUNDC1, NUDT3, PROSER2, ZNF708, PPP2R3A, TMEM33, CD96, MRPL37, RABL3, COX19, SIGLEC9, SYNJ2BP, SLC35F6, KIAA1549, SERINC3, FGD6, TRIP11, SLFN13, PDE6A, HAS2, SLC43A2, EFCAB11, TRAPPC10, SLC33A1, XIAP, ETV3, THAP6, NKD1, RBM3, SCO1, ESR2, DRAXIN, TLR10, MAPK13, MTSS1L, S1PR1, ZNF7, DNAL1, TPMT, TTLL12, KCNK3, RNF165, PCP4L1, ZSCAN2, TRIM65, SOCS5, GK5, RABIF, OCIAD1, ENTPD4, ZFP14, QSOX1, CXorf21, PLEKHA2, MYLK3, STAC2, ZNF70, KIAA1551, POFUT1, PLA2G16, QRFPR, MTMR9, ARMT1, GGA2, DNAJB13, PAIP2B, TLR7, RAI1, FAM241A, CYCS, TTPAL, NR2F2, CEP104, CDIPT, LRRC58, CNKSR3, AS3MT, KCNK5, INTS7, LYRM7, MPPE1, CACYBP, REL, JDP2, GPR137B, CDS2, MRPS10, AGO3, PNPLA3, C21orf33, DCTN5, RHOH, OLAH, C18orf32, ELK1, FAM13B, MSH3, RAB21, SP2, ANKRD65, FBXO47, EPHB2, C12orf49, AMOTL2, ZNF257, NME6, FFAR4, EMC3, BHMT2, KANSL3, ZNF786 |
Figure 5Prediction of circZNF609 pathways. (A) A network map comprising circZNF609, in which four miRNAs and their downstream targets was presented. (B) Venn diagram revealed the number of common downstream targets of four miRNAs. (C) The downstream targets related GO analysis. The blue bar chart represents the biological process, the green bar chart is the cellular component, and the red bar chart indicates the molecular function. (D) KEGG pathway analysis of the downstream targets. GO, gene ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes.