Literature DB >> 32641412

Genome-Wide Association Study Data Reveal Genetic Susceptibility to Chronic Inflammatory Intestinal Diseases and Pancreatic Ductal Adenocarcinoma Risk.

Fangcheng Yuan1,2, Rayjean J Hung3, Naomi Walsh4, Han Zhang1, Elizabeth A Platz2,5, William Wheeler6, Lei Song1, Alan A Arslan7,8,9,10, Laura E Beane Freeman1, Paige Bracci11, Federico Canzian12, Mengmeng Du13, Steven Gallinger3, Graham G Giles14,15,16, Phyllis J Goodman17, Charles Kooperberg18, Loic Le Marchand19, Rachel E Neale20, Jonas Rosendahl21, Ghislaine Scelo22, Xiao-Ou Shu23, Kala Visvanathan2,5, Emily White24, Wei Zheng23, Demetrius Albanes1, Pilar Amiano25,26,27, Gabriella Andreotti1, Ana Babic28, William R Bamlet29, Sonja I Berndt1, Paul Brennan22, Bas Bueno-de-Mesquita30,31,32,33, Julie E Buring34,35, Peter T Campbell36, Stephen J Chanock1, Charles S Fuchs37,38,39, J Michael Gaziano35,40, Michael G Goggins41, Thilo Hackert42, Patricia Hartge1, Manal M Hassan43, Elizabeth A Holly11, Robert N Hoover1, Verena Katzke44, Holger Kirsten45,46, Robert C Kurtz47, I-Min Lee34,35, Nuria Malats48, Roger L Milne14,15,16, Neil Murphy49, Kimmie Ng28, Ann L Oberg29, Miquel Porta50,51, Kari G Rabe29, Francisco X Real52,53,54, Nathaniel Rothman1, Howard D Sesso34,35, Debra T Silverman1, Ian M Thompson55, Jean Wactawski-Wende56, Xiaoliang Wang24, Nicolas Wentzensen1, Lynne R Wilkens19, Herbert Yu19, Anne Zeleniuch-Jacquotte8,9,10, Jianxin Shi1, Eric J Duell57, Laufey T Amundadottir1, Donghui Li43, Gloria M Petersen29, Brian M Wolpin28, Harvey A Risch58, Kai Yu1, Alison P Klein2,5,41, Rachael Stolzenberg-Solomon59.   

Abstract

Registry-based epidemiologic studies suggest associations between chronic inflammatory intestinal diseases and pancreatic ductal adenocarcinoma (PDAC). As genetic susceptibility contributes to a large proportion of chronic inflammatory intestinal diseases, we hypothesize that the genomic regions surrounding established genome-wide associated variants for these chronic inflammatory diseases are associated with PDAC. We examined the association between PDAC and genomic regions (±500 kb) surrounding established common susceptibility variants for ulcerative colitis, Crohn's disease, inflammatory bowel disease, celiac disease, chronic pancreatitis, and primary sclerosing cholangitis. We analyzed summary statistics from genome-wide association studies data for 8,384 cases and 11,955 controls of European descent from two large consortium studies using the summary data-based adaptive rank truncated product method to examine the overall association of combined genomic regions for each inflammatory disease group. Combined genomic susceptibility regions for ulcerative colitis, Crohn disease, inflammatory bowel disease, and chronic pancreatitis were associated with PDAC at P values < 0.05 (0.0040, 0.0057, 0.011, and 3.4 × 10-6, respectively). After excluding the 20 PDAC susceptibility regions (±500 kb) previously identified by GWAS, the genomic regions for ulcerative colitis, Crohn disease, and inflammatory bowel disease remained associated with PDAC (P = 0.0029, 0.0057, and 0.0098, respectively). Genomic regions for celiac disease (P = 0.22) and primary sclerosing cholangitis (P = 0.078) were not associated with PDAC. Our results support the hypothesis that genomic regions surrounding variants associated with inflammatory intestinal diseases, particularly, ulcerative colitis, Crohn disease, inflammatory bowel disease, and chronic pancreatitis are associated with PDAC. SIGNIFICANCE: The joint effects of common variants in genomic regions containing susceptibility loci for inflammatory bowel disease and chronic pancreatitis are associated with PDAC and may provide insights to understanding pancreatic cancer etiology. ©2020 American Association for Cancer Research.

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Year:  2020        PMID: 32641412      PMCID: PMC7861352          DOI: 10.1158/0008-5472.CAN-20-0447

Source DB:  PubMed          Journal:  Cancer Res        ISSN: 0008-5472            Impact factor:   12.701


  49 in total

1.  Differential Roles for Interleukin-23 and Interleukin-17 in Intestinal Immunoregulation.

Authors:  Joseph R Maxwell; Yu Zhang; William A Brown; Carole L Smith; Fergus R Byrne; Mike Fiorino; Erin Stevens; Jeannette Bigler; John A Davis; James B Rottman; Alison L Budelsky; Antony Symons; Jennifer E Towne
Journal:  Immunity       Date:  2015-09-29       Impact factor: 31.745

Review 2.  The epidemiology of pancreatitis and pancreatic cancer.

Authors:  Dhiraj Yadav; Albert B Lowenfels
Journal:  Gastroenterology       Date:  2013-06       Impact factor: 22.682

3.  Cancer risks in ulcerative colitis patients.

Authors:  Kari Hemminki; Xinjun Li; Jan Sundquist; Kristina Sundquist
Journal:  Int J Cancer       Date:  2008-09-15       Impact factor: 7.396

Review 4.  Primary sclerosing cholangitis.

Authors:  Gideon M Hirschfield; Tom H Karlsen; Keith D Lindor; David H Adams
Journal:  Lancet       Date:  2013-06-28       Impact factor: 79.321

5.  A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.

Authors:  Gloria M Petersen; Laufey Amundadottir; Charles S Fuchs; Peter Kraft; Rachael Z Stolzenberg-Solomon; Kevin B Jacobs; Alan A Arslan; H Bas Bueno-de-Mesquita; Steven Gallinger; Myron Gross; Kathy Helzlsouer; Elizabeth A Holly; Eric J Jacobs; Alison P Klein; Andrea LaCroix; Donghui Li; Margaret T Mandelson; Sara H Olson; Harvey A Risch; Wei Zheng; Demetrius Albanes; William R Bamlet; Christine D Berg; Marie-Christine Boutron-Ruault; Julie E Buring; Paige M Bracci; Federico Canzian; Sandra Clipp; Michelle Cotterchio; Mariza de Andrade; Eric J Duell; J Michael Gaziano; Edward L Giovannucci; Michael Goggins; Göran Hallmans; Susan E Hankinson; Manal Hassan; Barbara Howard; David J Hunter; Amy Hutchinson; Mazda Jenab; Rudolf Kaaks; Charles Kooperberg; Vittorio Krogh; Robert C Kurtz; Shannon M Lynch; Robert R McWilliams; Julie B Mendelsohn; Dominique S Michaud; Hemang Parikh; Alpa V Patel; Petra H M Peeters; Aleksandar Rajkovic; Elio Riboli; Laudina Rodriguez; Daniela Seminara; Xiao-Ou Shu; Gilles Thomas; Anne Tjønneland; Geoffrey S Tobias; Dimitrios Trichopoulos; Stephen K Van Den Eeden; Jarmo Virtamo; Jean Wactawski-Wende; Zhaoming Wang; Brian M Wolpin; Herbert Yu; Kai Yu; Anne Zeleniuch-Jacquotte; Joseph F Fraumeni; Robert N Hoover; Patricia Hartge; Stephen J Chanock
Journal:  Nat Genet       Date:  2010-01-24       Impact factor: 38.330

6.  Annotation of functional variation in personal genomes using RegulomeDB.

Authors:  Alan P Boyle; Eurie L Hong; Manoj Hariharan; Yong Cheng; Marc A Schaub; Maya Kasowski; Konrad J Karczewski; Julie Park; Benjamin C Hitz; Shuai Weng; J Michael Cherry; Michael Snyder
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

7.  Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.

Authors:  Carl A Anderson; Gabrielle Boucher; Charlie W Lees; Andre Franke; Mauro D'Amato; Kent D Taylor; James C Lee; Philippe Goyette; Marcin Imielinski; Anna Latiano; Caroline Lagacé; Regan Scott; Leila Amininejad; Suzannah Bumpstead; Leonard Baidoo; Robert N Baldassano; Murray Barclay; Theodore M Bayless; Stephan Brand; Carsten Büning; Jean-Frédéric Colombel; Lee A Denson; Martine De Vos; Marla Dubinsky; Cathryn Edwards; David Ellinghaus; Rudolf S N Fehrmann; James A B Floyd; Timothy Florin; Denis Franchimont; Lude Franke; Michel Georges; Jürgen Glas; Nicole L Glazer; Stephen L Guthery; Talin Haritunians; Nicholas K Hayward; Jean-Pierre Hugot; Gilles Jobin; Debby Laukens; Ian Lawrance; Marc Lémann; Arie Levine; Cecile Libioulle; Edouard Louis; Dermot P McGovern; Monica Milla; Grant W Montgomery; Katherine I Morley; Craig Mowat; Aylwin Ng; William Newman; Roel A Ophoff; Laura Papi; Orazio Palmieri; Laurent Peyrin-Biroulet; Julián Panés; Anne Phillips; Natalie J Prescott; Deborah D Proctor; Rebecca Roberts; Richard Russell; Paul Rutgeerts; Jeremy Sanderson; Miquel Sans; Philip Schumm; Frank Seibold; Yashoda Sharma; Lisa A Simms; Mark Seielstad; A Hillary Steinhart; Stephan R Targan; Leonard H van den Berg; Morten Vatn; Hein Verspaget; Thomas Walters; Cisca Wijmenga; David C Wilson; Harm-Jan Westra; Ramnik J Xavier; Zhen Z Zhao; Cyriel Y Ponsioen; Vibeke Andersen; Leif Torkvist; Maria Gazouli; Nicholas P Anagnou; Tom H Karlsen; Limas Kupcinskas; Jurgita Sventoraityte; John C Mansfield; Subra Kugathasan; Mark S Silverberg; Jonas Halfvarson; Jerome I Rotter; Christopher G Mathew; Anne M Griffiths; Richard Gearry; Tariq Ahmad; Steven R Brant; Mathias Chamaillard; Jack Satsangi; Judy H Cho; Stefan Schreiber; Mark J Daly; Jeffrey C Barrett; Miles Parkes; Vito Annese; Hakon Hakonarson; Graham Radford-Smith; Richard H Duerr; Séverine Vermeire; Rinse K Weersma; John D Rioux
Journal:  Nat Genet       Date:  2011-02-06       Impact factor: 38.330

8.  Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.

Authors:  Jonas Rosendahl; Holger Kirsten; Eszter Hegyi; Peter Kovacs; Frank Ulrich Weiss; Helmut Laumen; Peter Lichtner; Claudia Ruffert; Jian-Min Chen; Emmanuelle Masson; Sebastian Beer; Constantin Zimmer; Katharina Seltsam; Hana Algül; Florence Bühler; Marco J Bruno; Peter Bugert; Ralph Burkhardt; Giulia Martina Cavestro; Halina Cichoz-Lach; Antoni Farré; Josef Frank; Giovanni Gambaro; Sebastian Gimpfl; Harald Grallert; Heidi Griesmann; Robert Grützmann; Claus Hellerbrand; Péter Hegyi; Marcus Hollenbach; Sevastitia Iordache; Grazyna Jurkowska; Volker Keim; Falk Kiefer; Sebastian Krug; Olfert Landt; Milena Di Leo; Markus M Lerch; Philippe Lévy; Markus Löffler; Matthias Löhr; Maren Ludwig; Milan Macek; Nuria Malats; Ewa Malecka-Panas; Giovanni Malerba; Karl Mann; Julia Mayerle; Sonja Mohr; Rene H M Te Morsche; Marie Motyka; Sebastian Mueller; Thomas Müller; Markus M Nöthen; Sergio Pedrazzoli; Stephen P Pereira; Annette Peters; Roland Pfützer; Francisco X Real; Vinciane Rebours; Monika Ridinger; Marcella Rietschel; Eva Rösmann; Adrian Saftoiu; Alexander Schneider; Hans-Ulrich Schulz; Nicole Soranzo; Michael Soyka; Peter Simon; James Skipworth; Felix Stickel; Konstantin Strauch; Michael Stumvoll; Pier Alberto Testoni; Anke Tönjes; Lena Werner; Jens Werner; Norbert Wodarz; Martin Ziegler; Atsushi Masamune; Joachim Mössner; Claude Férec; Patrick Michl; Joost P H Drenth; Heiko Witt; Markus Scholz; Miklós Sahin-Tóth
Journal:  Gut       Date:  2017-07-28       Impact factor: 23.059

9.  Correlation of miR-425-5p and IL-23 with pancreatic cancer.

Authors:  Yanmin Lu; Xinqing Wu; Jinxiang Wang
Journal:  Oncol Lett       Date:  2019-03-04       Impact factor: 2.967

10.  Annual Report to the Nation on the Status of Cancer, Featuring Cancer in Men and Women Age 20-49 Years.

Authors:  Elizabeth M Ward; Recinda L Sherman; S Jane Henley; Ahmedin Jemal; David A Siegel; Eric J Feuer; Albert U Firth; Betsy A Kohler; Susan Scott; Jiemin Ma; Robert N Anderson; Vicki Benard; Kathleen A Cronin
Journal:  J Natl Cancer Inst       Date:  2019-12-01       Impact factor: 13.506

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  1 in total

1.  Polymorphisms of TNF-alpha (- 308), IL-1beta (+ 3954) and IL1-Ra (VNTR) are associated to severe stage of endometriosis in Mexican women: a case control study.

Authors:  Jennifer Mier-Cabrera; Oliver Cruz-Orozco; Julio de la Jara-Díaz; Oscar Galicia-Castillo; Mario Buenrostro-Jáuregui; Alicia Parra-Carriedo; César Hernández-Guerrero
Journal:  BMC Womens Health       Date:  2022-08-26       Impact factor: 2.742

  1 in total

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