| Literature DB >> 32640024 |
J W Timotëus Deelen1, Wouter C Rottier1, José A Giron Ortega2, Jesús Rodriguez-Baño2, Stephan Harbarth3, Evelina Tacconelli4, Gunnar Jacobsson5, Jean-Ralph Zahar6,7, Cornelis H van Werkhoven1, Marc J M Bonten1,8.
Abstract
BACKGROUND: The possibility of bloodstream infections caused by third-generation cephalosporin-resistant Enterobacterales (3GC-R-BSI) leads to a trade-off between empiric inappropriate treatment (IAT) and unnecessary carbapenem use (UCU). Accurately predicting 3GC-R-BSI could reduce IAT and UCU. We externally validate 2 previously derived prediction rules for community-onset (CO) and hospital-onset (HO) suspected bloodstream infections.Entities:
Keywords: Bacteraemia; ESBL; antibiotic resistance; antibiotics; bloodstream infection
Mesh:
Substances:
Year: 2021 PMID: 32640024 PMCID: PMC8849131 DOI: 10.1093/cid/ciaa950
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 9.079
Box 1.Prediction Rules
Figure 1.Flow chart of the study. There are 2 separate cohorts, one for the community-onset prediction rule and one for the hospital-onset prediction rule, where different data were collected. Abbreviations: 3GC-R-BSI, third-generation cephalosporin-resistant bloodstream infection; 3GC-R GNI, third-generation cephalosporin-resistant gram-negative infection.
Predictors and Baseline Variables of the Community-onset Rule
| 3GC-R EB BSI (n = 97) | Without 3GC-R EB BSI (4553) | |
|---|---|---|
| Predictors | ||
| Age, years | 73.1 ± 12.9 | 66.5 ± 17.9 |
| Suspected source of infection | ||
| Urinary tract | 52 (53.6) | 933 (20.5) |
| Respiratory tract | 14 (14.4) | 1615 (35.5) |
| Immunocompromised | 30 (30.9) | 1095 (24.1) |
| Prior culture with 3GC-R EB (<1 year) | 27 (27.8) | 255 (5.6) |
| Prior antibiotic use (<2 months) | 65 (67.0) | 1710 (37.6) |
| Other descriptive variables | ||
| Male sex | 61 (62.9) | 2611 (57.3) |
| Culture obtained where | ||
| Internal medicine | 68 (70.1) | 3326 (73.1) |
| Surgery | 20 (20.6) | 773 (17.0) |
| ICU | 8 (8.2) | 333 (7.3) |
| other | 1 (1.0) | 121 (2.6) |
| Suspected source of infection | ||
| Intra-abdominal | 19 (19.6) | 593 (13.0) |
| Other | 12 (12.4) | 1615 (35.5) |
| Other 3GC-R positive cultures | 51 (52.6) | 181 (4.0) |
| Of which include urine culture | 44 (45.4) | 101 (2.2) |
| Cultured pathogens | ||
| | 66 (68.0) | 268 (5.9) |
| | 16 (16.5) | 54 (1.2) |
| Other Enterobacterales | 15 (15.5) | 39 (0.9) |
| No growth | … | 3680 (80.8) |
| | … | 98 (2.2) |
| Other gram-positive | … | 300 (6.6) |
| Other species | … | 95 (2.1) |
| Nonfermenters | … | 24 (0.5) |
| Empiric antibiotics | ||
| Amoxicillin | 0 (0.0) | 112 (2.5) |
| Co-amoxiclav | 7 (7.2) | 767 (16.8) |
| First-generation cephalosporins | 0 (0.0) | 13 (0.3) |
| Second-generation cephalosporins | 1 (1.0) | 306 (6.7) |
| Third-generation cephalosporins | 30 (30.9) | 1736 (38.1) |
| Fourth/fifth-generation cephalosporins | 2 (2.1) | 28 (0.6) |
| Piperacillin/tazobactam | 26 (26.8) | 902 (19.8) |
| Fluoroquinolones | 12 (12.4) | 592 (13.0) |
| Aminoglycosides | 4 (4.1) | 187 (4.1) |
| Carbapenems | 28 (28.9) | 398 (8.7) |
| Sulfamethoxazol/trimethoprim | 0 (0.0) | 35 (0.8) |
Data are presented as n (%) unless otherwise indicated.
Abbreviations: BSI, bloodstream infection; ICU, intensive care unit; 3GC-R, third-generation cephalosporin-resistant.
Figure 2.Calibration plots: community-onset model (A); original model (B). Recalibration of the intercept. Systematic underprediction occurs in the original model, which disappears after updating the intercept to account for the higher incidence of 3GC-R-BSI in the validation cohort. Abbreviation: 3GC-R-BSI, third-generation cephalosporin-resistant bloodstream infection.
Clinical Impact on Carbapenem Use, Community Onset
| 3GC-R-BSI as Outcome | 3GC-R-GNI as Outcome | |||||||
|---|---|---|---|---|---|---|---|---|
| Cutoff | 4.3% | 5% | 6.6% | Current Cohort | 4.3% | 5% | 6.6% | Current Cohort |
| Proportion of cohort, % | 9.1 | 6.8 | 4.6 | … | 9.1 | 6.8 | 4.6 | … |
| Sensitivity, % | 38.1 | 28.9 | 25.8 | … | 35.0 | 29.2 | 24.8 | … |
| Specificity, % | 91.6 | 93.7 | 95.8 | … | 92.6 | 94.7 | 96.7 | … |
| PPV, % | 8.8 | 8.9 | 11.6 | … | 23.2 | 26.0 | 33.4 | … |
| NPV, % | 98.6 | 98.4 | 98.4 | … | 95.6 | 95.4 | 95.3 | … |
| Appropriate carbapenems, n/N (%) | 37/97 (38) | 28/97 (29) | 25/97 (26) | 28/97 (29) | 98/278 (35) | 82/278 (29) | 72/278 (26) | 65/278 (24) |
| Potential appropriate 3GC-R-EB coveragea | … | … | … | 56/97 (57.8) | … | … | … | 140/278 (50.4) |
| Unnecessary carbapenems, n/N (%) | 384/4553 (8.4) | 287/4553 (6.3) | 190/4553 (4.2) | 398 (8.7) | 323/4372 (7.4) | 233/4372 (5.3) | 143 /4372 (3.2) | 361 (8.2) |
The cutoff reflects the predicted 3GC-R-BSI risk for an individual patient. For instance, at the 5% cutoff, 6.8% of all patients in the cohort have a risk of at least 5% for 3GC-R-BSI (proportion of cohort). At this cutoff the prediction rule has a sensitivity of 28.9% and a PPV of 8.9%. If all patients would be treated accordingly, 28 patients with 3GC-R-BSI would be empirically treated with carbapenems (which resembles the observed number of patients with 3GC-R-BSI who received carbapenems—thus, a 0% change). Another 287 patients without 3GC-R-BSI would also receive carbapenem, which reflects a 28% relative reduction (from 8.7% to 6.3%). Increasing the cutoff to 6.6% reduces both the number of appropriately treated patients (11% reduction), but also the number with unnecessary carbapenem use (53% reduction).
On the right, the analysis repeated with all 3GC-R-GNIs as outcome. The net carbapenem use is the same, but when considering a carbapenem appropriate for a 3GC-R–positive clinical culture, more patients are treated appropriately.
Abbreviations: NPV, negative-predictive value; PPV, positive-predictive value; 3GC-R, third-generation cephalosporin-resistant; 3GC-R-BSI, third-generation cephalosporin-resistant bloodstream infection; 3GC-R-GNI, third-generation cephalosporin-resistant gram-negative infection.
aIncludes cefepime, piperacillin/tazobactam, colistin, and aminoglycosides. Of note, resistance data on these antibiotics have not been collected; thus, they may inappropriate.
Predictor and Baseline Variables of the Hospital-onset Cohort
| 3GC-R EB BSI (n = 83) | Without 3GC-R-BSI (n = 1600) | |
|---|---|---|
| Predictors | ||
| Suspected source of infection | ||
| Respiratory tract | 7 (8.4) | 391 (24.3) |
| Central venous catheter | 50 (60.2) | 691 (43.0) |
| Solid malignancy | 26 (31.3) | 417 (26.1) |
| Prior culture with 3GC-R EB | 36 (43.4) | 200 (12.5) |
| Prior cephalosporin use (<2 months) | 39 (47.0) | 451 (28.2) |
| Surgery in last month | 40 (48.2) | 498 (31.1) |
| Renal disease | 22 (26.5) | 270 (16.9) |
| Pre-infection length of stay in days (IQR) | 17 (9–33.5) | 11 (5–21) |
| Hypoperfusion | 19 (22.9) | 273 (17.1) |
| Other descriptive variables | ||
| Age, years | 63.2 ± 16.0 | 64.6 ± 16.7 |
| Male sex | 52 (62.7) | 967 (60.4) |
| Suspected source of infection | ||
| Intra-abdominal | 43 (51.8) | 278 (17.4) |
| Urinary tract | 16 (19.3) | 230 (14.3) |
| Other | 17 (20.5) | 709 (44.1) |
| Culture ward | ||
| Internal medicine | 38 (45.8) | 969 (60.6) |
| Surgery | 27 (32.5) | 393 (24.6) |
| ICU | 17 (20.5) | 251 (15.7) |
| Carbapenem resistance | 35 (42.2) | … |
| Other 3GC-R EB culture | 24 (28.9) | 116 (7.3) |
| Of which include urine | 17 (20.5) | 69 (4.3) |
| Cultured pathogens | ||
| | 28 (33.7) | 66 (4.1) |
| | 45 (54.2) | 34 (2.1) |
| Other Enterobacterales | 10 (12.0) | 33 (2.1) |
| No growth | … | 1133 (70.8) |
| | … | 75 (4.7) |
| Other gram-positve | … | 162 (10.1) |
| Other species | … | 52 (3.2) |
| Nonfermenters | … | 47 (2.9) |
| Empiric antibiotics | ||
| Amoxicillin/penicillin | 0 (0.0) | 6 (0.4) |
| Co-amoxiclav | 3 (3.6) | 143 (8.9) |
| First/second-generation cephalosporins | 0 (0.0) | 64 (4.0) |
| Third-generation cephalosporins | 12 (14.5) | 395 (24.7) |
| Fourth/fifth-generation cephalosporins | 1 (1.2) | 32 (2.0) |
| Piperacillin/tazobactam | 21 (25.3) | 502 (31.4) |
| Fluoroquinolones | 6 (7.2) | 138 (8.6) |
| Aminoglycosides | 6 (7.2) | 67 (4.2) |
| Carbapenems | 40 (48.2) | 363 (22.7) |
| Sulfamethoxazol/trimethoprim | 1 (1.2) | 22 (1.4) |
| | 11 (13.3) | 17 (1.1) |
Data are presented as n (%) unless otherwise indicated.
Abbreviations: BSI, bloodstream infection; ICU, intensive care unit; IQR, interquartile range; 3GC-R, third-generation cephalosporin-resistant; 3GC-R-BSI, third-generation cephalosporin-resistant bloodstream infection.
Figure 3.Calibration plots of the hospital-onset original model (A), and recalibration in the large (B).