A convenient approach to [1,2,5]oxadiazolo[3',4':5,6]pyrazino[2,3-b]indoles and their heteroannulated analogues bearing various aryl substituents in the backbone has been developed. This synthetic protocol is based on Pd-catalyzed Buchwald-Hartwig and subsequent annulation by intramolecular oxidative cyclodehydrogenation. The photophysical properties for new polycycles have been measured.
A convenient approach to [1,2,5]oxadiazolo[3',4':5,6]pyrazino[2,3-b]indoles and their heteroannulated analogues bearing various aryl substituents in the backbone has been developed. This synthetic protocol is based on Pd-catalyzed Buchwald-Hartwig and subsequent annulation by intramolecular oxidative cyclodehydrogenation. The photophysical properties for new polycycles have been measured.
Indolo[2,3-b]pyrazines are significant structural
motifs possessing many important applications such as in medicinal
chemistry and material sciences (Figure ). Namely, indolo[2,3-b]pyrazine
derivatives display a wide range of promising biological activities,
such as antibacterial,[1] anticancer,[2] and antiviral activities.[3] Many indolopyrazine derivatives have also been suggested as promising
materials for organic electronics such as organic light-emitting diodes,[4] solar cells,[5] and
organic transistor memory devices.[6]
Figure 1
Representative
compound bearing the indolo[2,3-b]pyrazine core.
Representative
compound bearing the indolo[2,3-b]pyrazinecore.There are five main routes for construction of
the indolopyrazinecore that are described in the literature, and they should be discussed
to identify their weaknesses (Scheme ). The most famous methods for the preparation of indolopyrazineconsist in the condensation of isatin with o-phenylenediamine
(route 1, Scheme )[1,2c,6,7] or
condensation of in situ-generated 2,3-diaminoindole
with α-dicarbonyl compounds (route 2, Scheme ).[8] Generally,
the main limitations of these methods are obtaining regioisomeric
mixtures of indolopyrazines, when unsymmetrical o-phenylenediamines or α-dicarbonyl compounds are used. Buchwald–Hartwig
amination followed by C–H activation from secondary amines
and 2,3-dibromoquinoxaline in one pot (route 3, Scheme )[9] and a two-step
approach using Suzuki cross-coupling and subsequent annulation by
Pd-catalyzed twofold C–Ncoupling reactions with primary amines
(route 4, Scheme )[10] afford indolo[2,3-b]pyrazines
in high yield but they similarly do not possess regioselectivity.
Furthermore, routes 3 and 4 have not corresponded the concept of the
pot, atom, and step economic (PASE)[11] synthetic
procedure because it requires using 2,3-di(chloro)bromopyrazines that
is necessary for an additional introduction of halogens in the pyrazine
ring. Another regioselective method for the synthesis of the indolopyrazines
based on a sequential rhodium-catalyzed formal [3+3] cycloaddition
and aromatization reaction of various diazoindolinimines with azirines.[12] This protocol requires a highly expensive and
non-eco-friendly rhodium catalyst and infrequent raw materials. All
these features eventually lead to the necessity of developing new
PASE processes to synthesize indolopyrazine and their heteroanalogues
that will be based on the metal-free oxidative C–H bond functionalization
(so-called SNH reaction).[13]
Scheme 1
Synthetic Routes
to the Formation of the Indolo[2,3-b]pyrazine Scaffold
It should be mentioned that [1,2,5]oxadiazolo[3,4-b]pyrazine (so-called “ furazanopyrazine”)
exhibits
higher electron-withdrawing character than similar nonannulated pyrazine
analogues and can be readily involved into the metal-free oxidative
C–H bond functionalization.[14] Nowadays,
there is only one example of the synthesis of unsubstituted 5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole (I) and its 5-alkyl-substituted derivatives
(II) as a new family of effective inhibitors for the
β-catenin/T-cell factor protein–protein interaction (Scheme ).[15]
Scheme 2
Synthesis of 5H-[1,2,5]Oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole (I) and its 5-Alkyl-Substituted Derivatives
(II)
By the foregoing,
furazanopyrizine derivatives have been selected
as major precursors of novel aryl-substituted 5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indoles.
Results and Discussion
Synthesis
It has
been found that the reaction of 5-(2-bromophenyl)-[1,2,5]oxadiazolo[3,4-b]pyrazine 1 with aniline 2a afforded
5-phenyl-5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole 3a in good yield (Scheme ). The conditions of the domino
reaction of 1 with aniline 2a were optimized
(Table ). The ligand,
palladium precursor, base, and solvent were varied. The results showed
that tricyclohexylphosphine (PCy3) often gave better yields
than other ligands. In fact, up to 45% yield of 3a was
achieved by employment of PCy3 as a ligand in combination
with Pd(OAc)2 as the Pd source (Table , entry 10).
Scheme 3
Domino Synthesis
of 5-Phenyl-5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole 3a
Table 1
Optimization for the Synthesis of 3a
entry
Pd precursor
(equiv)
ligand (20 mol %)
base (2.5 equiv)
solvent
yield 3a (%)
1
Pd(PPh3)4 (5 mol %)
K3PO4
1,4-dioxane
0
2
Pd(PPh3)4 (10 mol %)
K3PO4
1,4-dioxane
9
3
Pd(PPh3)2Cl2 (10 mol %)
PPh3
K3PO4
1,4-dioxane
15
4
Pd2(dba)3 (10 mol %)
PCy3
K3PO4
1,4-dioxane
28
5
Pd(OAc)2 (10 mol %)
XantPhos
K3PO4
1,4-dioxane
35
6
Pd(OAc)2 (10 mol %)
XPhos
K3PO4
1,4-dioxane
33
7
Pd(OAc)2 (10 mol %)
PCy3
DABCO
1,4-dioxane
0
8
Pd(OAc)2 (10 mol %)
PCy3
K2CO3
1,4-dioxane
35
9
Pd(OAc)2 (10 mol %)
PCy3
K3PO4
1,4-dioxane
40
10
Pd(OAc)2 (10 mol %)
PCy3
K3PO4
toluene
45
With the optimized conditions in
hand, we examined the scope of
the twofold C–N annulation reaction of 1 with
various anilines 2b–i and benzylamine 2j. The results showed that the annulations gave the same yields for
anilines bearing both electron-withdrawing and -donating substituents.
However, the domino reactions with sterically crowded ortho-2b,f and meta-substituted 2c,g anilines have resulted in the expected 5-aryl-5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole 3 in lower yields than with unsubstituted 2a and para-substituted 2d,h anilines
(Scheme ). In contrast,
the reactions of 1 with alkylamines, using our optimized
conditions (Table , entry 10), resulted in the formation of side products which were
difficult to separate from the main product. The appropriate result
was only achieved for the synthesis of product 3j derived
from benzylamine in 59% yield. Structures of 5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indoles were verified by X-ray diffraction analysis performed
for the single-crystal sample of 5-(m-tolyl)-substituted
derivative 3i (Figure ), thus supporting the 1H and 13CNMR spectroscopic data.
Scheme 4
Synthesis and Structures of 5H-[1,2,5]Oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole Derivatives 3a–j
Figure 2
ORTEP of 3i with thermal ellipsoids
at the 50% probability
level.
ORTEP of 3i with thermal ellipsoids
at the 50% probability
level.A feasible reaction mechanism is depicted in Scheme . The reaction between
the 1 and aniline 2a proceeds through the
Buchwald–Hartwig
amination, which gives intermediate A, followed by an
intramolecular nucleophilic attack at C(6) position furazanopyrizinecore B. The subsequent oxidation of dihydropyrazine intermediate B by air oxygen leads to the polycyclic system 3a.To confirm this hypothesis, we carried out the reactions
of furazanopyrazine 1 with aniline 2a without
using any palladiumcatalyst only in the presence of various bases. It has been shown
that transition-metal-free oxidative dehydrogenation cross-coupling
reaction leads to 4a with the highest yield of 55% in
the presence of sodium hydride as a base (Scheme ). Using these conditions allowed us to obtain
a wide range of corresponding SNH products by the reaction of 1 with the same series of amines. It is supposed that these reactions’
C–H functionalization proceeds through nucleophilic substitution
of hydrogen according to the two-step “Addition–Oxidation”
mechanism.[13]
Scheme 5
Synthesis and Structures
of N-Aryl-6-(2-bromophenyl)-[1,2,5]oxadiazolo[3,4-b]pyrazin-5-amines 4a–i
To increase the yields of polycyclic compounds 3,
we have carried out the annulation reaction of 4a in
the earlier developed best conditions of Buchwald–Hartwig amination
(Scheme ). Unfortunately,
despite yields of intramolecular C–Ncoupling annulation being
72%, the two-step overall yield of 3a from compound 1 to 3a achieved only to 40%.
Scheme 6
Synthesis of 5-Phenyl-5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indole 4a by Intramolecular Buchwald–Hartwig
Amination
The suggested approach to the
construction of the indolo[2,3-b]pyrazinecore has
also been applied successfully for the
synthesis of different indolopyrazines with annulated benzene and/or
thiophene rings (Scheme ). In this regard, it is noteworthy that the only reaction of 5-(3-bromothiophen-2-yl)-[1,2,5]oxadiazolo[3,4-b]pyrazine5a with aniline 2a yielded
desired 8-phenyl-8H-[1,2,5]oxadiazolo[3,4-b]thieno[2′,3′:4,5]pyrrolo[2,3-e]pyrazine7a and compound 6a as a by-product.
In other cases, the reactions of the bromine-substituted derivatives 5b–d with aniline 2a led to the classic
Buchwald–Hartwig amination products 6b–d in 77–89% yields. Notably, using PCy3 as a ligand
for the palladiumcatalyst in this case afforded products in yields
only up to 40%, while the replacement of it by Xantphos significantly
increased the yield of compounds 6b–d.
Scheme 7
Synthesis
of Heteroannulated Indolopyrazine Derivatives 7a–d
Further treatment of amination
products 6b–d by acids, followed by oxidation
with air oxygen, also leads to similar
cyclization products 7b–d. Following the literature,
trifluoroacetic acid[16] was used for the
cyclization of thiophenyl-substituted quinoxaline 6b,
while a mixture of hydrochloric acid[17] in
ethanol led to the transformation of amino derivatives 6a,c into indolopyrazines7c,b in high yields (Scheme ).
Conclusions
In summary, we have
described a convenient approach to construct
derivatives of a key heterocyclic system, namely, [1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indoles, bearing various substituents in the pyrrole fragment,
based on domino Pd-catalyzed Buchwald–Hartwig and subsequent
annulation by intramolecular oxidative cyclodehydrogenation reactions.
The two-step synthesis of other heteroannulated indolopyrazine analogues
has been realized using this synthetic approach. The further design
and synthesis of different indoloannulated derivatives using this
reaction procedure, as well as the elucidation of photophysical and
electronic properties of these polycyclic compounds, are currently
in progress.
Experimental Section
General Information
All reagents and solvents were
obtained from commercial sources and dried using standard procedures
before use. 1H and 13CNMR spectra were obtained
on Bruker DRX-400, AVANCE-500, and AVANCE-600 spectrometers with TMS
as internal standards. Elemental analysis was carried out on a Eurovector
EA 3000 automated analyzer. Melting points were determined on Boetius
combined heating stages and were not corrected. All solvents used
were dried and distilled as per standard procedures. IR spectra of
samples (solid powders) were recorded on a Spectrum One Fourier transform
IR spectrometer (PerkinElmer) equipped with a diffuse reflectance
attachment (DRA). UV–vis spectra were recorded for ∼10–5 to 10–6 M CH2Cl2 solutions with a Shimadzu UV-2401PC spectrophotometer. X-ray
diffraction analysis was performed on an automated X-ray diffractometer
“Xcalibur E” based on the standard procedure. The deposition
number CCDC 1989238 for 3i contains the Supporting Information crystallographic data for this paper.
These data can be obtained free of charge from the Cambridge Crystallographic
Data Centre via www.ccdc.cam.ac.uk/data_request/cif.
General Procedure for the
Synthesis of 2-Bromophenyl and 3-(Bromothiophen-2-yl)-Substituted
1,4-Diazine Derivatives (1 and 5a–d)
Selenium dioxide (1.1 g, 10 mmol) was dissolved in 1,4-dioxane/H2O 15:1 (16 mL) and the mixture was heated at reflux for 5
min. 2′-Bromoacetophenone [or 2-acetyl-3-bromothiophene] (10
mmol) was added and heating continued for next 12 h. The reaction
mixture was filtered and the filtrate was concentrated under reduced
pressure to give the corresponding aryl glyoxal as light-yellow oil.
The solution of 3,4-diaminofurazan [or 1,2-phenylenediamine] (10 mmol)
and crude aryl glyoxal in a mixture of EtOH (5 mL) and CH3COOH (5 mL) was refluxed for 1 h. After that, the mixture was cooled
down, and the precipitate was filtered off and washed with ethanol
and then air-dried.
2-Acetyl-3-bromothiophene
and
3,4-diaminofurazan were used for the synthesis of product 5a.Pale yellow powder; yield 2.15 g (76%); mp 174–176
°C. 1HNMR (500 MHz, DMSO-d6): δ 9.79 (s, 1H), 8.19 (d, J = 5.3 Hz, 1H),
7.46 (d, J = 5.3 Hz, 1H). 13CNMR (126
MHz, DMSO-d6): δ 154.5, 154.0, 151.9,
151.1, 135.3, 134.2, 134.1, 114.8. Anal. Calcd for C8H3BrN4OS (283.10): C, 33.94; H, 1.07; N, 19.79. Found:
C, 33.92; H, 0.96; Br, 28.22; N, 19.69.
2-(3-Bromothiophen-2-yl)quinoxaline
(5b)
2-Acetyl-3-bromothiophene and 1,2-phenylenediamine
were used for
the synthesis of product 5b.Beige powder; yield
2.39 g (82%); mp 111–112 °C. 1HNMR (500 MHz,
DMSO-d6): δ 9.72 (s, 1H), 8.15–8.09
(m, 2H), 7.98 (d, J = 5.3 Hz, 1H), 7.93–7.88
(m, 2H), 7.36 (d, J = 5.3 Hz, 1H). 13CNMR (126 MHz, DMSO-d6): δ 146.3,
142.7, 141.3, 140.7, 135.8, 132.8, 131.3, 131.1, 130.4, 128.9, 128.8,
109.8. Anal. Calcd for C12H7BrN2S
(291.17): C, 49.50; H, 2.42; N, 9.62. Found: C, 49.54; H, 2.56; N,
9.38.
2-(2-Bromophenyl)pyrazine (5c)
Commercially
available material 5c was used in our experiments.
2-(2-Bromophenyl)quinoxaline (5d)
2′-Bromoacetophenone
and 1,2-phenylenediamine were used for the synthesis of product 5b.Pale yellow powder; yield 2.28 g (77%); mp 112–113
°C (ref (18) 116–118
°C). 1HNMR (400 MHz, CDCl3): δ 9.20
(s, 1H), 8.21 (td, J = 6.1, 3.2 Hz, 2H), 7.85 (dt, J = 6.4, 3.4 Hz, 2H), 7.76 (dd, J = 8.0,
1.2 Hz, 1H), 7.69 (dd, J = 7.7, 1.8 Hz, 1H), 7.52
(td, J = 7.5, 1.2 Hz, 1H), 7.39 (td, J = 7.7, 1.7 Hz, 1H). Anal. Calcd for C14H9BrN2 (285.14): C, 58.97; H, 3.18; N, 9.82. Found: C, 58.88; H,
3.38; N, 9.69. Data similar to the literature.[18]
General Procedure for the Synthesis of 5-Aryl-5H-[1,2,5]oxadiazolo[3′,4′:5,6]pyrazino[2,3-b]indoles (3a–j)
A stirred
mixture of
5-(2-bromophenyl)-[1,2,5]oxadiazolo[3,4-b]pyrazine
(1) (135 mg, 0.5 mmol), corresponding anilines (0.6 mmol),
tricyclohexylphosphine (28 mg, 20 mol %), Pd(OAc)2 (11
mg, 10 mol %), and K3PO4 (265 mg, 1.25 mmol)
in degassed 1,4-dioxane (15 mL) was heated at reflux under nitrogen
for 15 h in a Schlenk tube. The reaction mixture was cooled, filtered,
acidified with concentrated CH3COOH (1 mL), and dissolved
with a mixture of EtOAc and water 1:1 (50 mL), and the organic layer
was separated. The aqueous layer was extracted with EtOAc (2 ×
25 mL). The combined organic extracts were dried with MgSO4 and the solvents were evaporated. The organic layer was separated,
dried over anhydrous Na2SO4, and concentrated.
The crude product was purified by column chromatography using hexane
and ethyl acetate as an eluent.
General Procedure
for the Synthesis of N-Aryl-6-(2-bromophenyl)-[1,2,5]oxadiazolo[3,4-b]pyrazin-5-amines (4a–i)
A
stirred mixture of 5-(2-bromophenyl)-[1,2,5]oxadiazolo[3,4-b]pyrazine (1) (135 mg, 0.5 mmol), corresponding
anilines (0.6 mmol), and sodium hydride (24 mg, 1.0 mmol) in dry 1,4-dioxane
(5 mL) was stirred at room temperature for 48 h. The reaction mixture
was acidified with concentrated CH3COOH (1 mL). The solvent
was distilled off in vacuo, and the crude product
was purified by column chromatography using hexane and ethyl acetate
as an eluent.
General Procedure
for the Buchwald–Hartwig Cross-Coupling
Reaction for the Synthesis of Compounds 6a and 7a
A stirred mixture of 5-(3-bromothiophen-2-yl)-[1,2,5]oxadiazolo[3,4-b]pyrazine (5a) (142 mg, 0.5 mmol), aniline
(2a) (55 mg, 0.6 mmol), 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene
(Xantphos) (58 mg, 20 mol %), Pd(OAc)2 (11 mg, 10 mol %),
and K3PO4 (265 mg, 1.25 mmol) in degassed 1,4-dioxane
(15 mL) was heated at reflux under nitrogen for 15 h in a Schlenk
tube. The reaction mixture was cooled, filtered, and dissolved with
a mixture of AcOEt and water 1:1 (50 mL), and the organic layer was
separated. The aqueous layer was extracted with AcOEt (2 × 25
mL). The combined organic extracts were dried with MgSO4 and the solvents were evaporated. The organic layer was separated,
dried over anhydrous Na2SO4, and concentrated.
The crude products 6a and 7a were purified
by column chromatography using hexane and ethyl acetate as an eluent.
General Procedure for the Buchwald–Hartwig Cross-Coupling
Reaction for the Synthesis of Compounds 6b, 6c, and 6d
A stirred mixture of N-phenyl-2-(quinoxalin-2-yl)thiophen-3-amine (5b) [N-phenyl-2-(pyrazin-2-yl)aniline (5c) or N-phenyl-2-(quinoxalin-2-yl)aniline (5d) (0.5
mmol), aniline (2a) (55 mg, 0.6 mmol), 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (Xantphos) (58 mg, 20 mol
%), Pd(OAc)2 (11 mg, 10 mol %), and K3PO4 (265 mg, 1.25 mmol) in degassed 1,4-dioxane (15 mL) was heated
at reflux under nitrogen for 15 h in a Schlenk tube. The reaction
mixture was cooled, filtered, and dissolved with a mixture of AcOEt
and water 1:1 (50 mL), and the organic layer was separated. The aqueous
layer was extracted with AcOEt (2 × 25 mL). The combined organic
extracts were dried with MgSO4 and the solvents were evaporated.
The organic layer was separated, dried over anhydrous Na2SO4, and concentrated. The crude products 6b–d were purified by column chromatography using hexane and ethyl acetate
as an eluent.
Synthesis of 4-Phenyl-4H-thieno[2′,3′:4,5]pyrrolo[2,3-b]quinoxaline (7b)
The suspension
of N-phenyl-2-(quinoxalin-2-yl)thiophen-3-amine (6b) (152 mg, 0.5 mmol) in trifluoroacetic acid (5 mL) was
stirred at 50 °C for 24 h. The solvent was removed under reduced
pressure. The crude product 7b was purified by column
chromatography using hexane and ethyl acetate as an eluent.
General Procedure for the Synthesis of 5-Phenyl-5H-pyrazino[2,3-b]indole (7c) and 6-Phenyl-6H-indolo[2,3-b]quinoxaline
(7d)
The suspension of N-phenyl-2-(pyrazin-2-yl)aniline
(6c) [or N-phenyl-2-(quinoxalin-2-yl)aniline
(6d)] (0.5 mmol) in EtOH/conc. HCl (10 mL, v/v 99:1)
was refluxed for 1 h. The solvent was removed under reduced pressure.
The crude products 7c and 7d were purified
by column chromatography using hexane and ethyl acetate as an eluent.
Authors: Egor V Verbitskiy; Pascal le Poul; Filip Bureš; Sylvain Achelle; Alberto Barsella; Yuriy A Kvashnin; Gennady L Rusinov; Valery N Charushin Journal: Molecules Date: 2022-06-30 Impact factor: 4.927