Literature DB >> 32635743

Enhancing colorimetric loop-mediated isothermal amplification speed and sensitivity with guanidine chloride.

Yinhua Zhang1, Guoping Ren1, Jackson Buss1, Andrew J Barry1, Gregory C Patton1, Nathan A Tanner1.   

Abstract

Loop-mediated isothermal amplification (LAMP) is a versatile technique for detection of target DNA and RNA, enabling rapid molecular diagnostic assays with minimal equipment. The global SARS-CoV-2 pandemic has presented an urgent need for new and better diagnostic methods, with colorimetric LAMP utilized in numerous studies for SARS-CoV-2 detection. However, the sensitivity of colorimetric LAMP in early reports has been below that of the standard RT-qPCR tests, and we sought to improve performance. Here we report the use of guanidine hydrochloride and combined primer sets to increase speed and sensitivity in colorimetric LAMP, bringing this simple method up to the standards of sophisticated techniques and enabling accurate, high-throughput diagnostics.

Entities:  

Keywords:  LAMP; PCR; SARS-CoV-2; high-throughput screening; isothermal amplification; molecular diagnostics

Year:  2020        PMID: 32635743     DOI: 10.2144/btn-2020-0078

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  53 in total

1.  Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification.

Authors:  Matthew A Lalli; Joshua S Langmade; Xuhua Chen; Catrina C Fronick; Christopher S Sawyer; Lauren C Burcea; Michael N Wilkinson; Robert S Fulton; Michael Heinz; William J Buchser; Richard D Head; Robi D Mitra; Jeffrey Milbrandt
Journal:  Clin Chem       Date:  2021-01-30       Impact factor: 8.327

2.  The One Hour COVID Test: A Rapid Colorimetric Reverse-Transcription LAMP-Based COVID-19 Test Requiring Minimal Equipment.

Authors:  Christopher M Monaco; Ellen Jorgensen; Sarah Ware
Journal:  J Biomol Tech       Date:  2021-09

3.  Real-time optical analysis of a colorimetric LAMP assay for SARS-CoV-2 in saliva with a handheld instrument improves accuracy compared with endpoint assessment.

Authors:  Lena M Diaz; Brandon E Johnson; Daniel M Jenkins
Journal:  J Biomol Tech       Date:  2021-09

4.  Homebrew reagents for low-cost RT-LAMP.

Authors:  Tamara Matute; Isaac Nuñez; Maira Rivera; Javiera Reyes; Paula Blázquez-Sánchez; Aníbal Arce; Alexander J Brown; Chiara Gandini; Jennifer Molloy; César A Ramírez-Sarmiento; Fernán Federici
Journal:  J Biomol Tech       Date:  2021-09

5.  Saliva "Treat-and-Heat" Triplex Reverse Transcription Loop-Mediated Isothermal Amplification Assay for SARS-CoV-2.

Authors:  Marie J Y Reolo; Carlos S R Eleazar; Joseph P Sonio; Ryonne T Solon; Janika L B Villamor; Alexandra K Loedin; Keith J M Moore
Journal:  J Biomol Tech       Date:  2021-09

6.  Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons.

Authors:  Scott Sherrill-Mix; Young Hwang; Aoife M Roche; Abigail Glascock; Susan R Weiss; Yize Li; Leila Haddad; Peter Deraska; Caitlin Monahan; Andrew Kromer; Jevon Graham-Wooten; Louis J Taylor; Benjamin S Abella; Arupa Ganguly; Ronald G Collman; Gregory D Van Duyne; Frederic D Bushman
Journal:  Genome Biol       Date:  2021-06-03       Impact factor: 13.583

7.  Fast Detection of SARS-CoV-2 RNA Directly from Respiratory Samples Using a Loop-Mediated Isothermal Amplification (LAMP) Test.

Authors:  Olympia E Anastasiou; Caroline Holtkamp; Miriam Schäfer; Frieda Schön; Anna Maria Eis-Hübinger; Andi Krumbholz
Journal:  Viruses       Date:  2021-04-29       Impact factor: 5.048

8.  Intrinsic signal amplification by type III CRISPR-Cas systems provides a sequence-specific SARS-CoV-2 diagnostic.

Authors:  Andrew Santiago-Frangos; Laina N Hall; Anna Nemudraia; Artem Nemudryi; Pushya Krishna; Tanner Wiegand; Royce A Wilkinson; Deann T Snyder; Jodi F Hedges; Calvin Cicha; Helen H Lee; Ava Graham; Mark A Jutila; Matthew P Taylor; Blake Wiedenheft
Journal:  Cell Rep Med       Date:  2021-05-27

9.  Optimization and Clinical Evaluation of a Multi-Target Loop-Mediated Isothermal Amplification Assay for the Detection of SARS-CoV-2 in Nasopharyngeal Samples.

Authors:  Foteini Roumani; Sarah Azinheiro; Hugo Sousa; Ana Sousa; Mafalda Timóteo; Tatiana Varandas; Daniela Fonseca-Silva; Inês Baldaque; Joana Carvalho; Marta Prado; Alejandro Garrido-Maestu
Journal:  Viruses       Date:  2021-05-19       Impact factor: 5.048

10.  SARS-CoV-2 detection by a clinical diagnostic RT-LAMP assay.

Authors:  Michael D Buck; Enzo Z Poirier; Ana Cardoso; Bruno Frederico; Johnathan Canton; Sam Barrell; Rupert Beale; Richard Byrne; Simon Caidan; Margaret Crawford; Laura Cubitt; Sonia Gandhi; Robert Goldstone; Paul R Grant; Kiran Gulati; Steve Hindmarsh; Michael Howell; Michael Hubank; Rachael Instrell; Ming Jiang; George Kassiotis; Wei-Ting Lu; James I MacRae; Iana Martini; Davin Miller; David Moore; Eleni Nastouli; Jerome Nicod; Luke Nightingale; Jessica Olsen; Amin Oomatia; Nicola O'Reilly; Anett Rideg; Ok-Ryul Song; Amy Strange; Charles Swanton; Samra Turajlic; Mary Wu; Caetano Reis e Sousa
Journal:  Wellcome Open Res       Date:  2021-05-21
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