Literature DB >> 32633947

Integrating the Impact of Lipophilicity on Potency and Pharmacokinetic Parameters Enables the Use of Diverse Chemical Space during Small Molecule Drug Optimization.

Randy R Miller1, Maria Madeira1, Harold B Wood2, Wayne M Geissler3, Conrad E Raab4, Iain J Martin5.   

Abstract

Lipophilicity has a dominant effect on many parameters that determine unbound drug exposure as well as drug potency. Despite this, analysis of a large body of drug data indicates lipophilicity has no consistent directional impact on dose. This can be rationalized based on the interplay of the effects of lipophilicity on individual parameter values in pharmacokinetic equations. We believe this undermines the effectiveness of strategies that target specific ranges for drug parameters for which lipophilicity plays such a dominant role. As a result, our research organization no longer leverages the common approach of screening for low intrinsic clearance in vitro to target high unbound exposure in vivo. Instead, we advocate for approaches less biased to lipophilicity through optimization of key parameter ratios controlling dose. We believe this improves efficiency in drug discovery by enabling exploration of broad physicochemical space.

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Year:  2020        PMID: 32633947     DOI: 10.1021/acs.jmedchem.9b01813

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  11 in total

Review 1.  Ligand binding at the protein-lipid interface: strategic considerations for drug design.

Authors:  Jian Payandeh; Matthew Volgraf
Journal:  Nat Rev Drug Discov       Date:  2021-07-13       Impact factor: 84.694

2.  A Retrospective Look at the Impact of Binding Site Environment on the Optimization of TRPA1 Antagonists.

Authors:  Elisia Villemure; Jack A Terrett; Robin Larouche-Gauthier; Martin Déry; Huifen Chen; Rebecca M Reese; Shannon D Shields; Jun Chen; Steven Magnuson; Matthew Volgraf
Journal:  ACS Med Chem Lett       Date:  2021-07-19       Impact factor: 4.632

3.  LipMetE (Lipophilic Metabolism Efficiency) as a Simple Guide for Half-Life and Dosing Regimen Prediction of Oral Drugs.

Authors:  Giuseppe Cecere; Laura Guasch; Andres M Olivares-Morales; Kenichi Umehara; Antonia F Stepan
Journal:  ACS Med Chem Lett       Date:  2022-08-23       Impact factor: 4.632

4.  Identification of Potent Reverse Indazole Inhibitors for HPK1.

Authors:  Elsie C Yu; Joey L Methot; Xavier Fradera; Charles A Lesburg; Brian M Lacey; Phieng Siliphaivanh; Ping Liu; Dustin M Smith; Zangwei Xu; Jennifer A Piesvaux; Shuhei Kawamura; Haiyan Xu; J Richard Miller; Mark Bittinger; Alexander Pasternak
Journal:  ACS Med Chem Lett       Date:  2021-03-01       Impact factor: 4.345

5.  Discovery of Diaminopyrimidine Carboxamide HPK1 Inhibitors as Preclinical Immunotherapy Tool Compounds.

Authors:  Brandon A Vara; Samuel M Levi; Abdelghani Achab; David A Candito; Xavier Fradera; Charles A Lesburg; Shuhei Kawamura; Brian M Lacey; Jongwon Lim; Joey L Methot; Zangwei Xu; Haiyan Xu; Dustin M Smith; Jennifer A Piesvaux; J Richard Miller; Mark Bittinger; Sheila H Ranganath; David J Bennett; Erin F DiMauro; Alexander Pasternak
Journal:  ACS Med Chem Lett       Date:  2021-03-19       Impact factor: 4.345

6.  Discovery of Potent Coumarin-Based Kinetic Stabilizers of Amyloidogenic Immunoglobulin Light Chains Using Structure-Based Design.

Authors:  Nicholas L Yan; Diogo Santos-Martins; Reji Nair; Alan Chu; Ian A Wilson; Kristen A Johnson; Stefano Forli; Gareth J Morgan; H Michael Petrassi; Jeffery W Kelly
Journal:  J Med Chem       Date:  2021-05-03       Impact factor: 7.446

7.  Bridged Piperidine Analogues of a High Affinity Naphthalene-Based P2Y14R Antagonist.

Authors:  Zhiwei Wen; Veronica Salmaso; Young-Hwan Jung; Ngan B Phung; Varun Gopinatth; Qasim Shah; Alexandra T Patterson; John C R Randle; Zhoumou Chen; Daniela Salvemini; David I Lieberman; Gregory S Whitehead; Tadeusz P Karcz; Donald N Cook; Kenneth A Jacobson
Journal:  J Med Chem       Date:  2022-02-03       Impact factor: 7.446

Review 8.  An Overview of NRF2-Activating Compounds Bearing α,β-Unsaturated Moiety and Their Antioxidant Effects.

Authors:  Melford Chuka Egbujor; Brigitta Buttari; Elisabetta Profumo; Pelin Telkoparan-Akillilar; Luciano Saso
Journal:  Int J Mol Sci       Date:  2022-07-30       Impact factor: 6.208

Review 9.  Physicochemical properties and Mycobacterium tuberculosis transporters: keys to efficacious antitubercular drugs?

Authors:  Elizabeth Fullam; Robert J Young
Journal:  RSC Med Chem       Date:  2020-12-07

10.  Multiple linear regression models for predicting the n‑octanol/water partition coefficients in the SAMPL7 blind challenge.

Authors:  Kenneth Lopez; Silvana Pinheiro; William J Zamora
Journal:  J Comput Aided Mol Des       Date:  2021-07-12       Impact factor: 3.686

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