Literature DB >> 32632858

The Single-Step Method of RNA Purification Applied to Leptospira.

Crispin Zavala-Alvarado1, Nadia Benaroudj2.   

Abstract

Establishing a rapid method to obtain pure and intact RNA molecules has revolutionized the field of RNA biology, enabling laboratories to routinely perform RNA analysis such as Northern blot, reverse transcriptase quantitative PCR, and RNA sequencing. Here, we describe an application of the effective single-step method of RNA extraction (or guanidinium thiocyanate-phenol-chloroform extraction) applied to Leptospira species. This method is based on the powerful ability of guanidinium thiocyanate to inactivate RNases and on the different solubilities of RNA and DNA in acidic phenol. This method allows one to reproducibly obtain total RNAs with high yield and integrity, as determined by capillary electrophoresis, suitable for the RNA sequencing technology.

Entities:  

Keywords:  Guanidinium thiocyanate; Leptospira; Phenol-chloroform extraction; RIN; RNA; RNA-Seq; RT-PCR; Spirochetes

Mesh:

Substances:

Year:  2020        PMID: 32632858     DOI: 10.1007/978-1-0716-0459-5_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  Genetic manipulation of pathogenic Leptospira: CRISPR interference (CRISPRi)-mediated gene silencing and rapid mutant recovery at 37 °C.

Authors:  L G V Fernandes; R L Hornsby; A L T O Nascimento; J E Nally
Journal:  Sci Rep       Date:  2021-01-19       Impact factor: 4.996

2.  The oxidative stress response of pathogenic Leptospira is controlled by two peroxide stress regulators which putatively cooperate in controlling virulence.

Authors:  Crispin Zavala-Alvarado; Samuel G Huete; Antony T Vincent; Odile Sismeiro; Rachel Legendre; Hugo Varet; Giovanni Bussotti; Céline Lorioux; Pierre Lechat; Jean-Yves Coppée; Frédéric J Veyrier; Mathieu Picardeau; Nadia Benaroudj
Journal:  PLoS Pathog       Date:  2021-12-02       Impact factor: 6.823

3.  Investigating the role of the carbon storage regulator A (CsrA) in Leptospira spp.

Authors:  Theerapat Phoka; Lenka Fule; Juliana Pipoli Da Fonseca; Thomas Cokelaer; Mathieu Picardeau; Kanitha Patarakul
Journal:  PLoS One       Date:  2021-12-13       Impact factor: 3.240

4.  The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress.

Authors:  Crispin Zavala-Alvarado; Odile Sismeiro; Rachel Legendre; Hugo Varet; Giovanni Bussotti; Jan Bayram; Samuel G Huete; Guillaume Rey; Jean-Yves Coppée; Mathieu Picardeau; Nadia Benaroudj
Journal:  PLoS Pathog       Date:  2020-10-06       Impact factor: 6.823

  4 in total

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