Literature DB >> 32629182

Identification of novel and selective agonists for ABA receptor PYL3.

Rahul Singh1, Vijay Kumar Bhardwaj2, Jatin Sharma1, Rituraj Purohit3.   

Abstract

Abscisic acid (ABA) although complicated and expensive to produce, plays an important role in signalling responsible for regulation of developmental manifestations such as seed maturation and surviving through stress conditions. Hence, development of cost effective molecules with minimal side effects that mimic the functions of ABA is the need of the hour. In this agreement, we screened a series of 27 in-house synthesized 3-methyleneisoindolin-1-one molecules over three ABA receptors (PYR1, PYL1, and PYL3). The commercial ABA agonist Pyrabactin was taken as a standard ligand in this study. The top three molecules for each receptor were selected and further evaluated to estimate the dynamical contribution and complex stability via Molecular Mechanics-Poisson Boltzmann surface area calculations. Two molecules (Mol26 and Mol25) showed higher binding free energy and stable complex conformation for PYL3 in comparison to Pyrabactin. This study revealed the structural basis of the binding mechanism of 3-methyleneisoindolin-1-one molecules with ABA receptors. Mol26 and Mol25 were identified for the development of specific PYL3 agonists with a vast potential in agriculture to accentuate the ABA like action in plants.
Copyright © 2020. Published by Elsevier Masson SAS.

Entities:  

Keywords:  ABA; LE; LLE; MD-Simulations; MM-PBSA; PP2Cs

Mesh:

Substances:

Year:  2020        PMID: 32629182     DOI: 10.1016/j.plaphy.2020.05.005

Source DB:  PubMed          Journal:  Plant Physiol Biochem        ISSN: 0981-9428            Impact factor:   4.270


  5 in total

Review 1.  Abiotic stress responses in plants.

Authors:  Huiming Zhang; Jianhua Zhu; Zhizhong Gong; Jian-Kang Zhu
Journal:  Nat Rev Genet       Date:  2021-09-24       Impact factor: 53.242

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Authors:  Hailin Chen; Zuping Zhang; Jingpu Zhang
Journal:  BMC Bioinformatics       Date:  2021-02-08       Impact factor: 3.169

3.  Potent ABA-independent activation of engineered PYL3.

Authors:  Yutao Wang; Chong Feng; Xiangtao Wu; Weihong Lu; Xiaoli Zhang; Xingliang Zhang
Journal:  FEBS Open Bio       Date:  2021-04-07       Impact factor: 2.693

4.  The Computer Simulation of Therapy with the NMDA Antagonist in Excitotoxic Neurodegeneration in an Alzheimer's Disease-like Pathology.

Authors:  Dariusz Świetlik; Aida Kusiak; Marta Krasny; Jacek Białowąs
Journal:  J Clin Med       Date:  2022-03-27       Impact factor: 4.241

5.  Benchmarking the ability of novel compounds to inhibit SARS-CoV-2 main protease using steered molecular dynamics simulations.

Authors:  Rahul Singh; Vijay Kumar Bhardwaj; Pralay Das; Dhananjay Bhattacherjee; Grigory V Zyryanov; Rituraj Purohit
Journal:  Comput Biol Med       Date:  2022-04-29       Impact factor: 6.698

  5 in total

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