Literature DB >> 32628172

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica.

Aki Masunaga1, Andrew W Liu2, Yongkai Tan2, Andrew Scott2, Nicholas M Luscombe3.   

Abstract

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact genome. For these reasons, it is considered a useful model organism for marine ecological studies, evolutionary developmental biology, and genomics. As research often requires a steady supply of animal resources, it is useful to establish a reliable, low-maintenance culture system. Here we describe a step-by-step method for establishing an O. dioica culture. We describe how to select potential sampling sites, collection methods, target animal identification, and the set-up of the culturing system. We provide troubleshooting advice based on our own experiences. We also highlight critical factors that help sustain a robust culture system. Although the culture protocol provided here is optimized for O. dioica, we hope our sampling technique and culture setup will inspire new ideas for maintaining other fragile pelagic invertebrates.

Entities:  

Year:  2020        PMID: 32628172     DOI: 10.3791/61279

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  2 in total

1.  H3S28P Antibody Staining of Okinawan  Oikopleura dioica Suggests the Presence of Three Chromosomes.

Authors:  Andrew W Liu; Yongkai Tan; Aki Masunaga; Aleksandra Bliznina; Charlotte West; Charles Plessy; Nicholas M Luscombe
Journal:  F1000Res       Date:  2020-07-28

2.  Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.

Authors:  Aleksandra Bliznina; Aki Masunaga; Michael J Mansfield; Yongkai Tan; Andrew W Liu; Charlotte West; Tanmay Rustagi; Hsiao-Chiao Chien; Saurabh Kumar; Julien Pichon; Charles Plessy; Nicholas M Luscombe
Journal:  BMC Genomics       Date:  2021-03-29       Impact factor: 3.969

  2 in total

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