Literature DB >> 32627430

Using Synthetic Biology to Engineer Spatial Patterns.

Javier Santos-Moreno1, Yolanda Schaerli1.   

Abstract

Synthetic biology has emerged as a multidisciplinary field that provides new tools and approaches to address longstanding problems in biology. It integrates knowledge from biology, engineering, mathematics, and biophysics to build-rather than to simply observe and perturb-biological systems that emulate natural counterparts or display novel properties. The interface between synthetic and developmental biology has greatly benefitted both fields and allowed to address questions that would remain challenging with classical approaches due to the intrinsic complexity and essentiality of developmental processes. This Progress Report provides an overview of how synthetic biology can help to understand a process that is crucial for the development of multicellular organisms: pattern formation. It reviews the major mechanisms of genetically encoded synthetic systems that have been engineered to establish spatial patterns at the population level. Limitations, challenges, applications, and potential opportunities of synthetic pattern formation are also discussed.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bottom-up approach; developmental biology; pattern formation; spatial patterns; synthetic biology

Mesh:

Year:  2018        PMID: 32627430     DOI: 10.1002/adbi.201800280

Source DB:  PubMed          Journal:  Adv Biosyst        ISSN: 2366-7478


  12 in total

1.  Programming and training rate-independent chemical reaction networks.

Authors:  Marko Vasić; Cameron Chalk; Austin Luchsinger; Sarfraz Khurshid; David Soloveichik
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-09       Impact factor: 12.779

Review 2.  Decoding and recoding plant development.

Authors:  Sarah Guiziou; Jonah C Chu; Jennifer L Nemhauser
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.005

Review 3.  Update on the Development of Toehold Switch-Based Approach for Molecular Diagnostic Tests of COVID-19.

Authors:  Almando Geraldi; Ni Nyoman Tri Puspaningsih; Fatiha Khairunnisa
Journal:  J Nucleic Acids       Date:  2022-05-09

4.  Genetic Network Architecture and Environmental Cues Drive Spatial Organization of Phenotypic Division of Labor in Streptomyces coelicolor.

Authors:  Vineetha M Zacharia; Yein Ra; Catherine Sue; Elizabeth Alcala; Jewel N Reaso; Steven E Ruzin; Matthew F Traxler
Journal:  mBio       Date:  2021-05-18       Impact factor: 7.867

Review 5.  Synthetic spatial patterning in bacteria: advances based on novel diffusible signals.

Authors:  Martina Oliver Huidobro; Jure Tica; Georg K A Wachter; Mark Isalan
Journal:  Microb Biotechnol       Date:  2021-11-29       Impact factor: 6.575

Review 6.  Turing pattern design principles and their robustness.

Authors:  Sean T Vittadello; Thomas Leyshon; David Schnoerr; Michael P H Stumpf
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-11-08       Impact factor: 4.226

7.  Elucidating multi-input processing 3-node gene regulatory network topologies capable of generating striped gene expression patterns.

Authors:  Juan Camilo Arboleda-Rivera; Gloria Machado-Rodríguez; Boris A Rodríguez; Jayson Gutiérrez
Journal:  PLoS Comput Biol       Date:  2022-02-14       Impact factor: 4.475

8.  Synthetic cell-based materials extract positional information from morphogen gradients.

Authors:  Aurore Dupin; Lukas Aufinger; Igor Styazhkin; Florian Rothfischer; Benedikt K Kaufmann; Sascha Schwarz; Nikolas Galensowske; Hauke Clausen-Schaumann; Friedrich C Simmel
Journal:  Sci Adv       Date:  2022-04-08       Impact factor: 14.136

9.  Self-Organization Emerging from Marangoni and Elastocapillary Effects Directed by Amphiphile Filament Connections.

Authors:  Mitch Winkens; Peter A Korevaar
Journal:  Langmuir       Date:  2022-08-25       Impact factor: 4.331

Review 10.  CRISPR-based gene expression control for synthetic gene circuits.

Authors:  Javier Santos-Moreno; Yolanda Schaerli
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

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