| Literature DB >> 32626720 |
Huan Wang1, Qian Liu2, Jing Hu3, Min Zhou2, Mu-Qing Yu2, Kai-Yan Li2, Dong Xu4, Yao Xiao3, Jun-Yi Yang3, Yan-Jun Lu5, Feng Wang5, Ping Yin3, Shu-Yun Xu2.
Abstract
Objective: Detection of SARS-CoV-2 by oropharyngeal swabs (OPS) and nasopharyngeal swabs (NPS) is an essential method for coronavirus disease 2019 (COVID-19) management. It is not clear how detection rate, sensitivity, and the risk of exposure for medical providers differ in two sampling methods.Entities:
Keywords: COVID-19; SARS-CoV-2; nasopharyngeal swab; oropharyngeal swab; sensitivity; viral load
Year: 2020 PMID: 32626720 PMCID: PMC7314917 DOI: 10.3389/fmed.2020.00334
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Baseline characteristics of the patients.
| Median (IQR)-yr | 61.5 (47.5–69.0) |
| ≤40 yr | 21/120 (17.5) |
| 41–64 yr | 53/120 (44.2) |
| ≥65 yr | 46/120 (38.3) |
| Female | 53/120 (44.2) |
| Male | 67/120 (55.8) |
| Non-severe | 37/120 (30.8) |
| Severe | 83/120 (69.2) |
| 47/120 (39.2) | |
| Hypertension | 36/120 (30.0) |
| Diabetes | 20/120 (16.7) |
| Coronary heart disease | 10/120 (8.3) |
| Cancer | 6/120 (5.0) |
| Chronic respiratory diseases | 2/120 (1.7) |
| Fever (≥37.3°C) | 109/120 (90.8) |
| Cough | 90/120 (75.0) |
| Dyspnea | 56/120 (46.7) |
| Fatigue | 42/120 (35.0) |
| Diarrhea | 33/120 (27.5) |
| Chest tightness | 31/120 (25.8) |
| Myalgia | 29/120 (24.2) |
| Nausea or vomit | 18/120 (15.0) |
| Leukocytes, per μL (reference range 3,500–9,500) | 120/120, 6400 (5000-8200) |
| Neutrophil, per μL (reference range 1,800–6,300) | 120/120, 4000 (3,000–5,700) |
| Lymphocyte, per μL (reference range 1,100–3,200) | 120/120, 1600 (1,200–1,900) |
| Erythrocytes, per μL(reference range 3,800,000–5,800,000) | 120/120, 4,100,000 (3,700,000–4,400,000) |
| Platelet, per μL (reference range 125,000–350,000) | 120/120, 208,500 (167,800–274,000) |
| Alanine aminotransferase, U/L (reference range 0–33) | 120/120, 27.0 (19.0–42.0) |
| Aspartate aminotransferase, U/L (reference range 0–32) | 120/120, 21.0 (17.0–29.5) |
| Urea, mmol/L (reference range 2.6–9.5) | 109/120, 4.5 (3.6–5.8) |
| Creatinine, μmol/L (reference range 45–104) | 110/120, 68.5 (58.0–87.0) |
| Hs-CRP, mg/L (reference range 0–10) | 104/120, 3.0 (1.2–7.0) |
| Procalcitonin, ng/mL (reference range 0–0.05) | 112/120, 0.03 (0.02–0.06) |
| Interleukin-6, pg/mL (reference range 0–7) | 94/120, 3.7 (1.5–9.9) |
| D-dimer, mg/L (reference range 0–0.5) | 109/120, 0.8 (0.4–1.6) |
| Lactate dehydrogenase, U/L (reference range 135–225) | 119/120, 201.0 (173.0–253.0) |
| Ferritin, μg/L (reference range 15–400) | 95/120, 513.3 (295.3–848.2) |
| Days since onset of initial symptoms | 27.0 (23.0–31.5) |
| Afebrile for at least 3 days (<37.3°C) | 108/120 (90.0) |
| Symptoms improved | 115/120 (95.8) |
| Chest CT improved | 98/105 (93.3) |
| One more negative SARS-CoV-2 test for discharge | 61/120 (50.8) |
The severe patients meeting any of the following criteria: respiratory distress (?30 breaths/ min);oxygen saturation ≤ 93% at rest; arterial partial pressure of oxygen (PaO.
no. /total no. denotes available number/total number because of some missing data of renal function, inflammatory factors.
no. /total no. denotes improved number/available number because of some missing data of chest CT.
The patients already had one negative SARS-CoV-2 test by OPS and needed one more negative test result to meet discharge criteria. Discharge criteria are afebrile for at least 3 days, respiratory symptoms significantly improved, improvement in the radiological abnormalities on chest radiograph or CT, and two consecutive negative SARS-CoV-2 tests more than 24 h apart (7).
IQR, interquartile range; Hs-CRP, hypersensitive C-reactive protein; CT, computed tomography; SARS-CoV-2, severe acute respiratory syndrome coronaviruses 2.
Detection of SARS-CoV-2 from NPS and OPS in all patients.
| OPS positive | 11 | 1 | 12 |
| OPS negative | 45 | 63 | 108 |
| Total | 56 | 64 | 120 |
McNemar's test χ.
Kappa: <0, poor; 0 to 0.2, slight; 0.21 to 0.4, fair; 0.41 to 0.6, moderate; 0.61 to 0.8, substantial; 0.81 to 1.0, almost perfect.
SARS-CoV-2, severe acute respiratory syndrome coronaviruses 2; NPS, nasopharyngeal swabs; OPS, oropharyngeal swabs.
Figure 1SARS-CoV-2 detection by NPS and OPS. (A) The detection rate (with 95% CI) of NPS and OPS with the development of the time course. (B) Time course (with IQR) of the detectable SARS-CoV-2 by paired NPS and OPS from 120 patients. (C) Time course of the detectable SARS-CoV-2 by paired NPS and OPS form 61 patients who needed one more negative SARS-CoV-2 result to meet the discharge criteria.
Figure 2PCR cycle threshold (Ct) value detected in NPS and OPS specimens. (A) Comparison of Ct values of 120 paired NPS and OPS specimens. Each data point represents the Ct values of NPS and OPS from one patient. (B) Ct values for NPS and OPS during treatment. Solid curves represent the trend derived by locally weighted scatterplot smoothing method. (C) Comparison of Ct values (with 95% CI) of paired NPS and OPS from 120 patients. (D) Comparison of Ct values (with 95% CI) of paired NPS and OPS from 57 patients with positive SARS-CoV-2. A lower Ct value corresponds to a higher viral load.
Figure 3Patient discomfort levels during NPS and OPS sampling (N = 103). (A) Percentage of four varying discomfort levels reported by patients during swab sampling. (B) Mean scores (with standard deviation) of symptoms during sampling. (C) Frequency of each symptom during sampling. *P < 0.01, **P < 0.001.