Literature DB >> 32620538

Twenty years of t-loops: A case study for the importance of collaboration in molecular biology.

Ľubomír Tomáška1, Anthony J Cesare2, Taghreed M AlTurki3, Jack D Griffith4.   

Abstract

Collaborative studies open doors to breakthroughs otherwise unattainable by any one laboratory alone. Here we describe the initial collaboration between the Griffith and de Lange laboratories that led to thinking about the telomere as a DNA template for homologous recombination, the proposal of telomere looping, and the first electron micrographs of t-loops. This was followed by collaborations that revealed t-loops across eukaryotic phyla. The Griffith and Tomáška/Nosek collaboration revealed circular telomeric DNA (t-circles) derived from the linear mitochondrial chromosomes of nonconventional yeast, which spurred discovery of t-circles in ALT-positive human cells. Collaborative work between the Griffith and McEachern labs demonstrated t-loops and t-circles in a series of yeast species. The de Lange and Zhuang laboratories then applied super-resolution light microscopy to demonstrate a genetic role for TRF2 in loop formation. Recent work from the Griffith laboratory linked telomere transcription with t-loop formation, providing a new model of the t-loop junction. A recent collaboration between the Cesare and Gaus laboratories utilized super-resolution light microscopy to provide details about t-loops as protective elements, followed by the Boulton and Cesare laboratories showing how cell cycle regulation of TRF2 and RTEL enables t-loop opening and reformation to promote telomere replication. Twenty years after the discovery of t-loops, we reflect on the collective history of their research as a case study in collaborative molecular biology.
Copyright © 2020 The Author(s). Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DNA repair; Double strand breaks; R-loop; Super resolution microscopy; T-circle; T-loop; Telomeres

Mesh:

Substances:

Year:  2020        PMID: 32620538      PMCID: PMC8679138          DOI: 10.1016/j.dnarep.2020.102901

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  114 in total

1.  Telomeric DNA in ALT cells is characterized by free telomeric circles and heterogeneous t-loops.

Authors:  Anthony J Cesare; Jack D Griffith
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

2.  TERRA transcripts are bound by a complex array of RNA-binding proteins.

Authors:  Isabel López de Silanes; Martina Stagno d'Alcontres; Maria A Blasco
Journal:  Nat Commun       Date:  2010-06-29       Impact factor: 14.919

3.  Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis.

Authors:  Barbara Zellinger; Svetlana Akimcheva; Jasna Puizina; Martina Schirato; Karel Riha
Journal:  Mol Cell       Date:  2007-07-06       Impact factor: 17.970

4.  Bongkrekic acid sensitivity of respiration-deficient mutants and of petite-negative species of yeasts.

Authors:  J Subík; J Kolarov; L Kovác
Journal:  Biochim Biophys Acta       Date:  1974-09-20

5.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

6.  Recombination at long mutant telomeres produces tiny single- and double-stranded telomeric circles.

Authors:  Cindy Groff-Vindman; Anthony J Cesare; Shobhana Natarajan; Jack D Griffith; Michael J McEachern
Journal:  Mol Cell Biol       Date:  2005-06       Impact factor: 4.272

7.  Linear mitochondrial DNAs from yeasts: telomeres with large tandem repetitions.

Authors:  J Nosek; N Dinouël; L Kovac; H Fukuhara
Journal:  Mol Gen Genet       Date:  1995-04-10

8.  An alternative pathway for yeast telomere maintenance rescues est1- senescence.

Authors:  V Lundblad; E H Blackburn
Journal:  Cell       Date:  1993-04-23       Impact factor: 41.582

Review 9.  Everything you ever wanted to know about Saccharomyces cerevisiae telomeres: beginning to end.

Authors:  Raymund J Wellinger; Virginia A Zakian
Journal:  Genetics       Date:  2012-08       Impact factor: 4.562

10.  Five dysfunctional telomeres predict onset of senescence in human cells.

Authors:  Zeenia Kaul; Anthony J Cesare; Lily I Huschtscha; Axel A Neumann; Roger R Reddel
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

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  12 in total

1.  Step-by-step evolution of telomeres: lessons from yeasts.

Authors:  Filip Červenák; Regina Sepšiová; Jozef Nosek; Ľubomír Tomáška
Journal:  Genome Biol Evol       Date:  2020-12-23       Impact factor: 3.416

Review 2.  Purification of mammalian telomeric DNA for single-molecule analysis.

Authors:  Giulia Mazzucco; Armela Huda; Martina Galli; Elia Zanella; Ylli Doksani
Journal:  Nat Protoc       Date:  2022-04-08       Impact factor: 13.491

3.  Partners in crime: Tbf1 and Vid22 promote expansions of long human telomeric repeats at an interstitial chromosome position in yeast.

Authors:  Elina A Radchenko; Anna Y Aksenova; Kirill V Volkov; Alexander A Shishkin; Youri I Pavlov; Sergei M Mirkin
Journal:  PNAS Nexus       Date:  2022-06-08

4.  A hypomorphic allele of telomerase uncovers the minimal functional length of telomeres in Arabidopsis.

Authors:  J Matthew Watson; Johanna Trieb; Martina Troestl; Kyle Renfrew; Terezie Mandakova; Jaroslav Fulnecek; Dorothy E Shippen; Karel Riha
Journal:  Genetics       Date:  2021-10-02       Impact factor: 4.402

Review 5.  Sequence, Chromatin and Evolution of Satellite DNA.

Authors:  Jitendra Thakur; Jenika Packiaraj; Steven Henikoff
Journal:  Int J Mol Sci       Date:  2021-04-21       Impact factor: 5.923

6.  Step-by-Step Evolution of Telomeres: Lessons from Yeasts.

Authors:  Filip Červenák; Regina Sepšiová; Jozef Nosek; Ľubomír Tomáška
Journal:  Genome Biol Evol       Date:  2021-02-03       Impact factor: 3.416

7.  Telomeric Double Strand Breaks in G1 Human Cells Facilitate Formation of 5' C-Rich Overhangs and Recruitment of TERRA.

Authors:  Christopher B Nelson; Taghreed M Alturki; Jared J Luxton; Lynn E Taylor; David G Maranon; Keiko Muraki; John P Murnane; Susan M Bailey
Journal:  Front Genet       Date:  2021-03-25       Impact factor: 4.599

Review 8.  The end protection problem-an unexpected twist in the tail.

Authors:  Phil Ruis; Simon J Boulton
Journal:  Genes Dev       Date:  2020-12-23       Impact factor: 11.361

Review 9.  Telomere Targeting Approaches in Cancer: Beyond Length Maintenance.

Authors:  Eleonora Vertecchi; Angela Rizzo; Erica Salvati
Journal:  Int J Mol Sci       Date:  2022-03-29       Impact factor: 5.923

10.  POLIE suppresses telomerase-mediated telomere G-strand extension and helps ensure proper telomere C-strand synthesis in trypanosomes.

Authors:  M A G Rabbani; Maiko Luis Tonini; Marjia Afrin; Bibo Li
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

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