Literature DB >> 32619577

Comparative genome analysis provides shreds of molecular evidence for reclassification of Leuconostoc mesenteroides MTCC 10508 as a strain of Leu. suionicum.

Girija Kaushal1, Sudhir P Singh2.   

Abstract

This study presents the whole-genome comparative analysis of a Leuconostoc sp. strain, previously documented as Leu. mesenteroides MTCC 10508. The ANI, dDDH, dot plot, and MAUVE analyses suggested its reclassification as a strain of Leu. suionicum. Functional annotation identified a total of 1971 genes, out of which, 265 genes were mapped to CAZymes, evincing its carbohydrate transforming capability. The genome comparison with 59 Leu. mesenteroides and Leu. suionicum strains generated the core and pan-genome profiles, divulging the unique genes in Leuconostoc sp. MTCC 10508. For the first time, this study reports the genes encoding alpha-xylosidase and copper oxidase in a strain of Leu. suionicum. The genetic information for any possible allergenic molecule could not be detected in the genome, advocating the safety of the strain. The present investigation provides the genomic evidence for reclassification of the Leuconostoc sp. strain and also promulgates the molecular insights into its metabolic potential.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alpha-xylosidase; Carbohydrate-active enzymes; Comparative genomics; Genome assembly; Leuconostoc mesenteroides; Leuconostoc suionicum

Year:  2020        PMID: 32619577     DOI: 10.1016/j.ygeno.2020.06.040

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  3 in total

1.  Elucidation of the initial bacterial community of Ezine PDO cheese using next-generation sequencing.

Authors:  Hale İnci Öztürk; Talha Demirci; Nihat Akın; Abdullah Oğul
Journal:  Arch Microbiol       Date:  2022-10-01       Impact factor: 2.667

2.  Comparative genome analysis of four Leuconostoc strains with a focus on carbohydrate-active enzymes and oligosaccharide utilization pathways.

Authors:  Anshul Sharma; Neha Sharma; Deepshikha Gupta; Hae-Jeung Lee; Young-Seo Park
Journal:  Comput Struct Biotechnol J       Date:  2022-08-27       Impact factor: 6.155

3.  Identification of Leuconostoc species based on novel marker genes identified using real-time PCR via computational pangenome analysis.

Authors:  Eiseul Kim; Seung-Min Yang; Ik-Seon Kim; So-Yun Lee; Hae-Yeong Kim
Journal:  Front Microbiol       Date:  2022-09-23       Impact factor: 6.064

  3 in total

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