Literature DB >> 32613961

Protein droplets in systems of disordered homopeptides and the amyloid glass phase.

Łukasz Mioduszewski1, Marek Cieplak.   

Abstract

In order to gain insight into the formation of proteinaceous liquid droplets, we study systems of many disordered homopeptide chains within our coarse-grained molecular dynamics model with conformation-dependent terms. We construct the phase diagrams for polyalanine of length 20 and polyglutamines of lengths 20, 40 and 60 based on the stationary-state cluster distribution. The phase diagrams are distinct but correspond to the same topology. We delineate the liquid-gas coexistence curve at around room temperature. We also identify a novel amyloid glass phase that is substantially cross linked forming amorphous and anisotropic spatial patterns. Generally, this phase is found at lower temperatures, but may also appear at room temperature for sufficiently long chains. We demonstrate the existence of fluid-like phenomena, like droplet fusion and fission. However, our available length scales have not yet shown the validity of the continuum physics description.

Entities:  

Year:  2020        PMID: 32613961     DOI: 10.1039/d0cp01635g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

Review 1.  Contact-Based Analysis of Aggregation of Intrinsically Disordered Proteins.

Authors:  Marek Cieplak; Łukasz Mioduszewski; Mateusz Chwastyk
Journal:  Methods Mol Biol       Date:  2022

2.  Computer Simulations Aimed at Exploring Protein Aggregation and Dissociation.

Authors:  Phuong H Nguyen; Philippe Derreumaux
Journal:  Methods Mol Biol       Date:  2022

3.  Computational Models for the Study of Protein Aggregation.

Authors:  Nguyen Truong Co; Mai Suan Li; Pawel Krupa
Journal:  Methods Mol Biol       Date:  2022

4.  Pseudo-Improper-Dihedral Model for Intrinsically Disordered Proteins.

Authors:  Łukasz Mioduszewski; Bartosz Różycki; Marek Cieplak
Journal:  J Chem Theory Comput       Date:  2020-06-12       Impact factor: 6.006

5.  Side Chain Geometry Determines the Fibrillation Propensity of a Minimal Two-Beads-per-Residue Peptide Model.

Authors:  Beata Szała-Mendyk; Andrzej Molski
Journal:  J Phys Chem B       Date:  2022-08-02       Impact factor: 3.466

6.  Plant isoquinoline alkaloids as potential neurodrugs: A comparative study of the effects of benzo[c]phenanthridine and berberine-based compounds on β-amyloid aggregation.

Authors:  Daniela Marasco; Caterina Vicidomini; Pawel Krupa; Federica Cioffi; Pham Dinh Quoc Huy; Mai Suan Li; Daniele Florio; Kerensa Broersen; Maria Francesca De Pandis; Giovanni N Roviello
Journal:  Chem Biol Interact       Date:  2020-10-22       Impact factor: 5.192

  6 in total

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